Specimen Details

ICMP 4326 – Pseudomonas cannabina pv. alisalensis Bull et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 4326

Culture type:

Bacterial Culture

Database record added:

25 January 2002

Database record updated:

03 October 2022

Components

Primary component

Active identification

Determined name:

Pseudomonas cannabina pv. alisalensis Bull et al.

Determiner:

Bull et al.

Identification date:

2010 (Verbatim: 2010)

Preferred name:

Pseudomonas cannabina pv. alisalensis Bull et al.

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Pseudomonadales

Family:

Pseudomonadaceae

Identification type:

Determination

Associations:

isolated from Raphanus sativus L.

Other identifications

Identification

Determined name:

Pseudomonas syringae pv. maculicola (McCulloch 1911) Young et al. 1978

Determiner:

Identification date:

Preferred name:

Pseudomonas syringae pv. maculicola (McCulloch 1911) Young et al.

Active:

Identification type:

Determination

Identification

Determined name:

Pseudomonas syringae pv. maculicola

Determiner:

Identification date:

Preferred name:

Pseudomonas syringae pv. maculicola (McCulloch 1911) Young et al.

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Raphanus sativus L.

Determiner:

Identification date:

Preferred name:

Raphanus raphanistrum subsp. sativus Domin

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Brassicales

Family:

Cruciferae

Vernacular name:

radish

Identification type:

Determination

Note:

possibly cultivar Cavalier

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Green Bay, Wisconsin

Verbatim locality:

Green Bay, Wisconsin

Verbatim collector:

N.T. Keen

Standardised collector:

Noel T. Keen

Collectors reference no.:

B-70

Verbatim date:

1965

Start date:

1965

Country:

United States

Culture flags

MPI:

Restricted Culture

Price Category:

Category 2

Culture notes

Characterised as:

Genomospecies 9 (P. cannabina)
Bull et al., 2010

Pathogenic to:

Moderately pathogenic to: Broccoli, Cabbage, Cauliflower, Leaf Mustard, Rutabaga Highly pathogenic to Radish cv. Cavalier. https://babel.hathitrust.org/cgi/pt?id=mdp.39015001262545;view=1up;seq=208 (page 192)
Williams & Keen, 1966

Strain Data:

also known in literature as ES4326 and Pvm 4326

External links

GenBank:

AB795319 - hrpS, hrpA, hrpB

GQ470209 - 16S ribosomal RNA

AEAK00000000 - genomic DNA

PRJNA33215 - Pseudomonas syringae pv. maculicola str. ES4326 genome sequencing project

CP047264 - hypothetical protein

CP047263 - AAA family ATPase, arylsulfatase regulator, DDE-type integrase/transposase/recombinase, diguanylate phosphodiesterase, DNA polymerase V subunit UmuC, DUF3757 domain-containing protein, effector protein, Effector protein hopW1-1, GntR family transcriptional regulator, HU family DNA-binding protein, hypothetical protein, IS481 family transposase, IS5 family transposase, IS5/IS1182 family transposase, IS630 family transposase, IS91 family transposase, LysR family transcriptional regulator, methyltransferase domain-containing protein, MFS transporter, recombinase family protein, replication protein A, stability/partitioning determinant, type II toxin-antitoxin system RelE/ParE family toxin

CP047262 - virB5, virB11, ssb

CP047261 - rnhB, umuC, yejK, dnaN, csrA, rdgC, ssb, rpoH

CP047260 - rep, alr, rpmG, rpmB, radC, coaBC, argB, pyrE, rpoZ, spoT, exbB, exbD, recG, yidD, yejB, gabT, gabP, tnpB, gabD, oscA, cysT, cysW, cysA, gcvT, gcvH, argE, argA, ompR, polA, znuA, znuC, znuB, katE, metI, hemB, ppk1, ppx, trxA, rho, ubiD, glpT, fliL, ssrS, zapA, pepP, ubiH, msrA, mutM, coaD, rsmD, ftsY, ftsE, rpoH, mtgA, thiS, trmB, betI, betB, betA, fdhA, purU, soxG, argS, rpmE, pilM, pilO, pilP, pilQ, aroK, aroB, gltB, hemE, mdcA, mdcE, mdcH, madL, madM, metF, choV, choW, choX, rarD, bioB, bioF, bioC, bioD, pqqE, pqqD, pqqC, pqqB, pqqA, pqqF, ccrA, yedA, tesB, trmA, cydB, mscL, radA, ettA, rplU, rpmA, cgtA, rpsT, murJ, ribF, ileS, ispH, hrpB, gorA, kefF, kefC, metC, pilV, thiO, bamD, rluD, pgeF, clpB, traD, dcm, vsr, topB, dnaB, ugpC, cheB, cheD, yacG, pilB, gstA, ampD, ampE, cra, ptsP, pfkB, panB, folK, pcnB, dksA, sfsA, deoC, mrcB, ilvN, ilvC, pssA, msrP, msrQ, rrf, rimI, gmd, vapC, rfbC, rfbA, rfbD, rfbB, ychF, prs, ispE, lolB, prfA, prmC, moeB, phrB, upp, mqo, rutF, rutD, rutC, rutB, rutA, rutR, cysZ, trxB, folX, folE, folM, yaaA, moaC, moaD, moaE, rhlB, yejK, rlmF, lptF, lptG, gcvP, gap, hexR, zwf, pgl, eda, cyoA, cyoB, cyoD, cyoE, hpxZ, atzF, hmpA, queA, tgt, yajC, secD, secF, trmJ, cysE, iscR, iscU, iscA, hscB, hscA, fdx, iscX, rlmN, pilW, ispG, hisS, bamB, der, leuA, guaB, guaA, nemA, pobA, flgM, flgA, cynS, flgB, flgC, flgD, flgG, flgH, flgI, flgJ, flgK, fliD, fliS, fliE, fliF, fliG, fliH, fliI, fliJ, fliM, fliN, fliO, fliP, fliQ, fliR, flhB, flhA, flhF, cheY, motD, fnr, ccoS, cadA, ccoG, ccoP, ccoO, ccoN, acnA, rlmM, tusA, pdxB, eat, pyrF, benE, prmB, aroC, mtnC, speE, lolD, queF, tal, dusA, macB, uvrB, leuC, leuD, leuB, asd, dgoD, gltA, sdhC, sdhD, sdhB, odhB, lpdA, sucC, sucD, brnQ, htpG, fabB, fabA, sixA, kdpF, kdpA, kdpB, kdpC, greB, cysB, thrH, pabB, prpB, prpC, acnD, prpF, ppsR, ppsA, sigX, cobA, rlmKL, dacB, pcaQ, pcaH, pcaG, pcaC, mobA, moaB, map, rbsK, rbsD, thrS, infC, rpmI, rplT, pheS, pheT, ihfA, glpK, aldA, ureG, ureC, ureE, urtE, urtD, urtC, urtB, urtA, folD, phnC, phnD, phnE, phnF, phnG, phnH, phnK, phnL, phnN, phnP, glnT, amt, sfnG, glsB, mntH, mrdA, poxB, moaA, tssI, hcp, tssA, tssB, tssC, tssE, tssF, tssG, tssH, tssJ, tssK, tssM, araH, nhaR, xylB, nudC, sohB, metH, nfuA, xthA, treS, glgB, lexA, imuA, dnaE, crtY, crtI, macA, gcvA, arnB, arnC, arnA, arnT, arnF, glf, galE, pxpA, ftrA, sbnA, modA, modB, modC, baeS, xylA, xylF, xylG, pgsA, uvrC, uvrY, ehuB, ehuC, ehuD, gloA, ahpF, ahpC, galU, alkB, gnd, glgA, treZ, malQ, glgX, pcaD, cobN, cobW, cobM, gspF, gspE, gspD, gspK, gspG, gspI, gspH, tolR, tolQ, nirB, nirD, pstB, pstA, pstC, pstS, gudD, pncA, solA, tusD, tusC, dsrH, tusE, serS, crcB, lolA, infA, clpA, clpS, mnmA, hflD, purB, aceA, ndhC, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, queD, rhtA, rfaH, ssuE, ligD, ssuD, iolD, mmsA, iolB, iolE, iolC, clsB, nagZ, topA, fadA, fadB, yegS, fahA, hppD, glcD, glcE, glcF, csrA, zapE, ampC, ada, efeO, efeB, ccmI, ccmE, ccmD, ccmB, ccmA, recR, acpA, ffs, ligA, zipA, smc, xdhA, xdhB, xdhC, guaD, uraH, puuE, uraD, alc, dnaQ, rnhA, gloB, clpX, clpP, lpxH, acnB, mntP, sbcD, pepN, arsB, ilvA, purF, folC, truA, mltG, pabC, fabF, acpP, fabG, fabD, plsX, rpmF, sppA, rluC, murB, kdsB, minC, minD, minE, rdgC, cysK, rnd, maeA, purC, bamC, nadA, queC, queE, ybgF, pal, tolB, tolA, ybgC, ruvB, ruvA, ruvC, aspS, dinB, mprF, rimO, tsaA, recX, recA, mutS, rpoS, surE, truD, ispF, fghA, ispD, ftsB, kdsA, tilS, accA, rnhB, lpxB, lpxA, fabZ, lpxD, bamA, rseP, uppS, pyrH, rpsB, dapC, dapD, tcdA, dapE, plsB, tsaB, lysS, prfB, recJ, dsbC, xerD, rplS, trmD, rimM, rpsP, purT, purL, mltF, tadA, norR, mgtE, bamE, alaS, ltaE, astE, astB, astD, astA, aruF, astC, acs, rluB, scpB, msrB, htpX, earP, ihfB, rpsA, pheA, serC, gyrA, mtnA, ubiG, mupP, rmuC, cobT, cobU, bluB, cobO, purM, purN, mazG, relA, rlmD, cysM, arsC, wrbA, ttcA, dctA, fhuF, recQ, pap, mnmC, ngg, hrpA, rapA, livH, livM, livG, pdxH, dinG, pdeM, apbC, metG, rsxB, nth, pyrC, rnt, bfr, grxD, argF, ybaK, ddlA, lon, cmoA, cmoB, pdxJ, recO, lepB, lepA, rpoE, nadB, yiaY, bglX, adeC, pcaF, sbcB, pyk, sodB, groL, fxsA, argJ, secA, ftsZ, ftsA, murC, murG, ftsW, murF, ftsL, rsmH, mraZ, rnpB, rsmI, rpsI, rplM, cysN, cysD, hisD, murA, mlaD, mlaE, lptC, lptA, lptB, raiA, ptsN, rapZ, pmbA, tldD, mreD, mreC, gatC, gatA, gatB, pnp, rpsO, truB, rbfA, infB, nusA, rimP, secG, glmM, folP, hflB, rlmE, greA, carB, carA, dapB, dnaJ, dnaK, grpE, recN, fur, smpB, ssrA, katG, nhaA, garD, kdgD, mnmH, selD, ggt, mmsB, recD, recB, recC, fecC, fecE, cueR, mpl, eutB, eutC, yghU, ribA, thiL, nusB, ribE, ribB, ribD, nrdR, lipA, lipB, mltB, rodA, rlmH, rsfS, nadD, speA, pbpC, cpaB, dsbD, aroQ, accC, prmA, dusB, fis, purH, purD, cobJ, cobG, ureA, cbpA, osmE, pncB, nadE, azu, rplI, rpsR, rpsF, rlmB, hflC, hflK, hflX, hfq, miaA, mutL, tsaE, queG, rsgA, motB, motA, psd, serB, parC, parE, cpdA, cytX, thiC, amn, hemL, miaB, ybeY, lnt, arfA, alaE, ssb, uvrA, rplQ, rpoA, rpsD, rpsK, rpsM, rpmJ, secY, rplO, rpmD, rpsE, rplR, rplF, rpsH, rpsN, rplE, rplX, rplN, rpsQ, rpmC, rplP, rpsC, rplV, rpsS, rplB, rplW, rplD, rplC, rpsJ, tuf, fusA, rpsG, rpsL, rpoC, rpoB, rplL, rplJ, rplA, rplK, nusG, secE, erpA, hemJ, coq7, speD, crp, trpC, trpD, potA, lptD, pdxA, rsmA, apaG, glpE, folB, plsY, tsaD, rpsU, rpoD, cmaA, hldE, msbA, rfaP, waaC, waaF, glnE, aceE, aceF, dbpA, yccS, putP, putA, mscK, gshB, ruvX, pyrR, metW, rdgB, hemW, ilvD, hslV, hslU, phaC, phaZ, ubiE, ubiB, hisI, tatB, tatC, mdoH, pip, glgP, hutC, tcyJ, tcyL, yecC, rlmJ, gbcB, gbcA, dgcB, dgcA, fba, pgk, epd, tkt, ligB, typA, thiI, glnA, ntrC, mgrA, hutU, hutH, hutG, cadR, rpiA, serA, ssuB, ssuC, trmL, secB, grxC, hisF, hisA, hisH, hisB, mutY, rimK, gltP, cyaY, lysA, dapF, xerC, glnK, aguA, aguB, cysQ, nudE, lysM, fdhD, tagF, tagH, phoB, phoR, phoU, purE, aspA, oadA, uvrD, pdxY, cls, mdoD, chrA, glmS, glmU, atpD, atpG, atpA, atpE, atpB, rsmG, mnmG, mnmE, yidC, rpmH, dnaA, dnaN, recF, gyrB, gmhB, glyQ, tag, trkA, rsmB, dprA, hemF, aroE, betC, trpB, prlC, hemC, argH

Literature:

Williams PH, Keen NT (1966) Bacterial blight of radish. Plant Dis Rep 50: 192–195

Sarris, Panagiotis F.; Trantas, Emmanouil A.; Baltrus, David A.; Bull, Carolee T.; Wechter, William Patrick; Yan, Shuangchun; Ververidis, Filippos; Almeida, Nalvo F.; Jones, Corbin D.; Dangl, Jeffery L.; Panopoulos, Nickolas J.; Vinatzer, Boris A.; Goumas, Dimitrios E. (2013)Comparative Genomics of Multiple Strains of Pseudomonas cannabina pv. alisalensis, a Potential Model Pathogen of Both Monocots and Dicots.PLoS ONE8(3)e59366-. DOI: 10.1371/journal.pone.0059366

Bull, Carolee T.; Manceau, Charles; Lydon, John; Kong, Hyesuk; Vinatzer, Boris A.; Fischer-Le Saux, Marion (2010)Pseudomonas cannabina pv. cannabina pv. nov., and Pseudomonas cannabina pv. alisalensis (Cintas Koike and Bull, 2000) comb. nov., are members of the emended species Pseudomonas cannabina (ex Šutič & Dowson 1959) Gardan, Shafik, Belouin, Brosch, Grimont & Grimont 1999.Systematic and Applied Microbiology33(3)105-115. DOI: 10.1016/j.syapm.2010.02.001

Baltrus, David A.; Nishimura, Marc T.; Romanchuk, Artur; Chang, Jeff H.; Mukhtar, M. Shahid; Cherkis, Karen; Roach, Jeff; Grant, Sarah R.; Jones, Corbin D.; Dangl, Jeffery L. (2011)Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates.PLoS Pathogens7(7)e1002132-. DOI: 10.1371/journal.ppat.1002132

Whalen, Maureen C.; Innes, Roger W.; Bent, Andrew F.; Staskawicz, Brian J. (1991)Identification of Pseudomonas syringae Pathogens of Arabidopsis and a Bacterial Locus Determining Avirulence on Both Arabidopsis and Soybean.The Plant Cell3(1)49-. DOI: 10.2307/3869199

Peters, B. J.; Ash, G. J.; Cother, E. J.; Hailstones, D. L.; Noble, D. H.; Urwin, N. A. R. (2004)Pseudomonas syringae pv. maculicola in Australia: pathogenic, phenotypic and genetic diversity.Plant Pathology53(1)73-79. DOI: 10.1111/j.1365-3059.2004.00946.x

StrainInfo:

19189

Culture links

Is Same As:

ICMP 18428

Culture events

Isolated:

Actioned by:

Noel T. Keen (Reference number B70)

Date:

1965 (Verbatim)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

National Collection of Plant Pathogenic Bacteria (Reference number NCPPB 1820)

Date:

01 October 1975 (Verbatim: 01 Oct 1975)

Duplicates

International Collection of Phytopathogenic Bacteria: ICPB PM176

Direction:

Duplicate

French Collection for Plant-associated Bacteria: CFBP 1637

Direction:

Duplicate

: ES4326

Direction:

Duplicate

Assigned reference numbers

PDDCC:

PDDCC 4326

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice