Systematics Collections Data

ICMP 4091 – Pseudomonas syringae pv. tagetis (Hellmers 1955) Young et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 4091
Type status:
Pathotype strain
Culture type:
Bacterial Culture
Database record added:
25 January 2002
Database record updated:
26 September 2023
Components
Primary component
Active identification
Determined name:
Pseudomonas syringae pv. tagetis (Hellmers 1955) Young et al. 1978
Determiner:
Identification date:
Preferred name:
Pseudomonas syringae pv. tagetis (Hellmers 1955) Young et al.
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Pseudomonadales
Family:
Pseudomonadaceae
Identification type:
Determination
Associations:
isolated from Tagetes erecta L.
Other identifications
Identification
Determined name:
Pseudomonas syringae pv. tagetis
Determiner:
Identification date:
Preferred name:
Pseudomonas syringae pv. tagetis (Hellmers 1955) Young et al.
Active:
no
Identification type:
Received as
Other components
Active identification
Determined name:
Tagetes erecta L.
Determiner:
Identification date:
Preferred name:
Tagetes erecta L.
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Asterales
Family:
Compositae
Vernacular name:
African marigold
Identification type:
Determination
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Verbatim locality:
[Unknown]
Verbatim collector:
J.F. Bradbury
Standardised collector:
J. F. Bradbury
Verbatim date:
1972
Start date:
1972
Country:
Zimbabwe
Culture flags
MPI:
Restricted Culture
Price Category:
Category 2
MPI:
Unwanted Organism
Culture notes
Other Details:
produces tagetitoxin (Lydon)
Characterised as:
LOPAT Ib
External links
GenBank:

PRJNA292453 - Pseudomonas Genome sequencing and assembly

LJRM00000000 - genomic DNA

KU161385 - dnaX

AY342202 - 16S-23S ribosomal RNA intergenic spacer

CP092923 - rep, cysW, cysT, oscA, gabT, gabD, lysA, istA, istB, yejB, argE, hslO, rimK, gltP, rnk, cyaY, dapF, xerC, glnK, recG, exbD, exbB, spoT, rpoZ, gmk, rph, pyrE, argB, dut, coaBC, radC, rpmB, rpmG, dadR, dadA, alr, gcvT, gcvH, argA, gshA, ompR, algB, yihA, polA, znuA, znuC, znuB, katE, elbB, hemB, ppk1, ppx, trxA, rho, ubiD, glpT, fliL, ssrS, pepP, ubiH, yecC, tcyL, tcyJ, nhaA, hutC, pip, dtd, mdoH, tatC, tatB, hisI, ubiB, ubiE, phaC, phaZ, hslU, hslV, argS, rpmE, pilO, pilP, aroK, aroB, gltB, hemE, fabG, mdcA, mdcE, mdcH, madL, madM, metF, ahcY, alaC, ilvD, hemW, rdgB, metW, proC, pyrR, ruvX, gshB, pilG, pilH, mscK, putA, putP, yccS, dbpA, aceF, aceE, glnE, waaF, waaC, rfaP, msbA, hldE, waaA, thiC, cytX, cpdA, parE, parC, serB, asd, motA, motB, rsgA, orn, queG, tsaE, mutL, miaA, hfq, hflX, hflK, hflC, rnr, rlmB, rpsF, rpsR, rplI, dnaB, azu, nadE, pncB, livM, dxs, metC, yghU, ppa, eutC, mpl, ubiX, cueR, fecE, fecC, rrf, recC, recB, recD, mmsB, ggt, phnE, selD, mnmH, rplU, rpmA, cgtA, proB, rpsT, murJ, ribF, ileS, lspA, ispH, pilV, thiO, rluD, pgeF, clpB, hopQ1-1, pilM, cheD, yacG, coaE, pilB, nadC, ampD, ampE, cra, ptsP, pfkB, pgi, panC, panB, folK, gluQRS, dksA, sfsA, deoC, mrcB, ilvN, ilvC, pssA, msrP, msrQ, rimI, can, bcsQ, bcsA, bcsB, bcsZ, vapB, gmd, rfbG, rfbF, rfbA, rfbD, rfbB, ychF, pth, ispE, lolB, hemA, prfA, prmC, murI, phrB, hemH, upp, mqo, rutF, rutD, rutC, rutB, rutA, rutR, pta, cysZ, trxB, folX, folE, folM, wecB, algG, algK, alg8, yaaA, moaC, moaD, moaE, rhlB, yejK, rlmF, lptF, lptG, gcvP, gap, edd, zwf, pgl, cyoA, cyoB, cyoD, cyoE, sodC, hpxZ, atzF, hmpA, sctI, sctJ, sctL, sctC, sctU, sctT, sctS, sctR, hrcN, sctD, sctV, sctW, queA, tgt, yajC, secD, secF, suhB, trmJ, cysE, iscR, iscU, iscA, hscB, hscA, fdx, iscX, ndk, rlmN, pilW, ispG, hisS, bamB, der, leuA, xseA, guaB, guaA, tadA, mltF, purL, purT, ccsA, ffh, rpsP, rimM, trmD, rplS, xerD, dsbC, thrC, recJ, prfB, lysS, ppc, adk, tsaB, plsB, dapE, tcdA, dapD, dapC, map, rpsB, tsf, pyrH, frr, uppS, ispC, rseP, bamA, lpxD, fabZ, lpxA, lpxB, rnhB, dnaE, accA, tilS, kdsA, eno, ftsB, ispD, fghA, ispF, truD, surE, rpoS, mutS, recA, recX, fpr, tsaA, rimO, mprF, dinB, aspS, ruvC, ruvA, ruvB, ybgC, tolQ, tolR, tolA, tolB, pal, ybgF, queE, queC, gspM, gspD, traD, nadA, dapA, bamC, tnpB, rnd, cysK, rdgC, minE, minD, minC, lpxK, kdsB, murB, rne, rluC, sppA, rpmF, plsX, fabD, acpP, fabF, pabC, mltG, tmk, truA, accD, folC, purF, ilvA, pepN, mntP, acnB, lpxH, cysS, folD, tig, clpP, clpX, lon, fabI, gloB, rnhA, dnaQ, vgrG, alc, uraD, puuE, uraH, guaD, xdhC, xdhB, xdhA, smc, zipA, ligA, ffs, dnaX, tusA, pdxB, eat, pyrF, prmB, aroC, mtnC, speE, mfd, sthA, lolD, queF, tal, dusA, pvdM, uvrB, gltX, leuC, leuD, leuB, dgoD, gltA, sdhC, sdhD, sdhA, odhB, lpdA, sucC, sucD, brnQ, htpG, fabB, fabA, sixA, kdpF, kdpA, kdpB, kdpC, greB, oprI, cysB, thrH, pabB, prpB, prpC, acnD, prpF, ppsA, rraA, sigX, cobA, rlmKL, dacB, pcaQ, pcaH, pcaG, pcaC, mobA, moaB, rbsK, rbsD, thrS, infC, rpmI, rplT, pheS, pheT, ihfA, ureG, ureC, ureE, urtE, urtD, urtC, urtB, urtA, purU, phnC, phnD, phnF, phnG, phnH, phnK, phnL, phnN, phnP, folE2, glnT, sfnG, ybtE, glsB, norR, mrdA, poxB, moaA, tssA, tssB, tssC, tssE, tssF, tssG, tssH, tssJ, tssK, icmH, tssM, araG, araH, dctA, ribBA, pbpG, nhaR, xylB, ugpC, cobF, nudC, sohB, metH, nfuA, xthA, tpx, treS, glgB, lexA, imuA, dhaL, rpiB, paoA, arnB, arnC, arnA, arnD, arnT, arnE, arnF, glf, galE, mhpT, ftrA, sbnB, modA, modB, modC, xylA, xylF, xylG, pgsA, uvrC, uvrY, pgm, glnH, glnP, glnQ, ehuB, ehuC, ehuD, gloA, ahpF, ahpC, gorA, galU, alkB, gnd, glgA, treZ, malQ, glgX, pcaD, pnuC, cobN, cobW, cobM, mapR, nirB, nirD, pstB, pstA, pstC, pstS, gudD, pncA, gspG, gspF, gspE, solA, tusD, tusC, tusB, cysG, serS, crcB, lolA, ftsK, aat, infA, clpA, clpS, cspD, mnmA, hflD, purB, aceA, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, queD, rhtA, rfaH, ssuE, ligD, ssuD, iolD, iolB, iolE, iolC, clsB, nagZ, psrA, topA, fadA, fadB, yegS, fahA, hmgA, hppD, maiA, glcD, glcE, glcF, csrA, katB, rarD, zapE, ada, efeO, efeB, ccmI, ccmE, ccmD, ccmB, ccmA, recR, rlmM, acnA, ccoN, ccoO, ccoP, ccoG, cadA, ccoS, hemN, fnr, motD, fliA, fleN, flhF, flhA, flhB, fliR, fliP, fliO, fliN, fliM, fliJ, fliI, fliH, fliG, fliF, fliE, fleQ, fliT, fliS, fliD, flgK, flgJ, flgH, flgG, flgE, flgD, flgC, flgB, cynS, cynR, cheR, flgA, flgM, ppnN, pobA, pdxA, mgtE, alaS, ltaE, astE, astB, astD, astA, aruF, argR, acs, phhA, arfB, rluB, scpB, msrB, htpX, earP, ihfB, rpsA, cmk, pheA, serC, gyrA, mtnA, ubiG, mupP, rmuC, cobT, cobU, cobD, cbiB, bluB, cobO, hda, purM, purN, mazG, relA, rlmD, cysM, arsC, wrbA, ttcA, fhuF, recQ, pap, mnmC, ngg, def, phbB, hrpA, fadD1, fadD2, rapA, livH, livG, pdxH, dinG, pdeM, dcd, apbC, metG, rsxB, nth, pyrC, rnt, bfr, grxD, argF, ybaK, glpK, glpD, metE, metR, ddlA, cmoA, cmoB, pdxJ, recO, era, rnc, lepB, lepA, rpoE, nadB, ung, uca, yiaY, bglX, adeC, pcaF, pcaR, sbcB, pyk, colR, groL, fxsA, argJ, secA, lpxC, ftsZ, ftsA, murC, murG, ftsW, murD, mraY, ftsL, rsmH, mraZ, rnpB, rsmI, rpsI, rplM, cysN, cysD, hisC, hisD, hisG, murA, mlaD, mlaE, lptC, lptA, lptB, raiA, ptsN, rapZ, pmbA, tldD, rng, mreD, mreC, mreB, gatC, gatA, gatB, pnp, rpsO, truB, rbfA, infB, nusA, rimP, secG, tpiA, glmM, folP, ftsH, rlmE, greA, carB, carA, dapB, dnaJ, dnaK, grpE, recN, fur, smpB, ssrA, katG, garD, kdgD, ettA, yjiA, radA, mscL, cydB, trmA, tesB, yedA, hrpB, amn, thiE, hemL, miaB, ybeY, lnt, leuS, lptE, holA, arfA, lipA, lipB, mltB, rodA, rlmH, rsfS, nadD, speA, pbpC, cpaB, aroQ, accB, accC, prmA, dusB, fis, purH, purD, retS, cobJ, cobG, ureA, cbpA, osmE, ribA, thiL, nusB, ribE, ribD, nrdR, uvrA, rplQ, rpoA, rpsD, rpsK, rpsM, rpmJ, secY, rplO, rpmD, rpsE, rplR, rplF, rpsH, rpsN, rplE, rplX, rplN, rpsQ, rpmC, rplP, rpsC, rplV, rpsS, rplB, rplW, rplD, rplC, rpsJ, tuf, fusA, rpsG, rpsL, rpoC, rpoB, rplL, rplJ, rplA, rplK, nusG, secE, birA, tyrS, erpA, argC, hemJ, coq7, speD, crp, trpC, trpD, trpE, rpe, rsmA, apaG, glpE, folB, plsY, tsaD, rpsU, dnaG, rpoD, pqqF, pqqA, pqqB, pqqC, pqqD, pqqE, bioD, bioC, bioF, bioB, choW, choV, fdhA, betA, betB, betI, trmB, thiS, mtgA, rpoH, ftsX, ftsE, ftsY, rsmD, coaD, mutM, mdtD, msrA, rlmJ, gbcB, gbcA, dgcB, dgcA, fba, epd, tkt, metK, ligB, typA, thiI, glnA, glnL, ntrC, mgrA, betT, hutU, hutH, hutI, hutG, cadR, lgt, rpiA, serA, potA, ssuB, ssuC, tauA, tauB, tauC, trmL, secB, grxC, gpmI, hisF, hisA, hisH, hisB, mutY, gabP, aguA, aguB, rfbC, cysQ, nudE, yrfG, lysM, fdhD, tagF, ubiA, phoB, phoR, phoU, purE, aspA, oadA, hexR, uvrD, pdxY, zigA, cls, cfaB, cysC, glmS, glmU, atpD, atpG, atpA, atpE, atpB, rsmG, mnmG, mnmE, yidC, yidD, rnpA, rpmH, dnaA, dnaN, recF, gyrB, gmhB, glyS, glyQ, tag, trkA, rsmB, fmt, dprA, hemF, aroE, betC, trpA, trpB, prlC, hemC, argH

CP092924 - eno, ppa, virB5, virB9, virB11

CP092925 - lhgO, virB5, virB11

-

-

-

LC033973 - hrpS, hrpA, hrpZ, hrpB

PRJNA812078 - Pseudomonas syringae pv. tagetis strain:ICMP4091 Genome sequencing

Literature:

Ruinelli, Michela; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F. (2019)Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp.BMC Genomics20(1). DOI: 10.1186/s12864-019-5555-y

Visnovsky, Sandra B.; Panda, Preeti; Everett, Kerry R.; Lu, Ashley; Butler, Ruth C.; Taylor, Robert K.; Pitman, Andrew R. (2020)A PCR diagnostic assay for rapid detection of plant pathogenic pseudomonads.Plant Pathology69(7)1311-1330. DOI: 10.1111/ppa.13204

Culture links
Relates To:
ICMP 4521
Culture events
Deposited:
Note:
Derived from earliest batch date
Actioned by:
Douglas W. Dye (Reference number LC1)
Date:
01 November 1974 (Verbatim: 01 Nov 1974)
Transferred via:
Actioned by:
National Collection of Plant Pathogenic Bacteria (Reference number NCPPB 2488)
Isolated:
Actioned by:
J. F. Bradbury (Reference number B5063)
Date:
1972 (Verbatim)
Duplicates
Belgian Coordinated Collections of Microorganisms: LMG 5092
Direction:
Duplicate
French Collection for Plant-associated Bacteria: CFBP 1694
Direction:
Duplicate
Assigned reference numbers
NZRCCNo:
NZRCC 10309
PDDCC:
PDDCC 4091
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice