Systematics Collections Data

ICMP 24687 – Chakrabartyella piscis Pardesi et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 24687
Type status:
Type strain
Culture type:
Bacterial Culture
Database record added:
21 December 2022
Database record updated:
06 November 2023
Components
Primary component
Active identification
Determined name:
Chakrabartyella piscis Pardesi et al.
Determiner:
Bikiran Pardesi
Identification date:
Preferred name:
Chakrabartyella piscis Pardesi et al.
Division:
Bacillota
Class:
Clostridia
Order:
Eubacteriales
Family:
Lachnospiraceae
Identification type:
Determination
Type status:
Type strain
Associations:
isolated from Kyphosus sydneyanus Günther
Other identifications
Identification
Determined name:
Lachnospiraceae Rainey 2010
Determiner:
Bikiran Pardesi
Identification date:
2016-08-31 (Verbatim: 31 Aug 2016)
Preferred name:
Lachnospiraceae Rainey 2010
Active:
no
Identification type:
Determination
Note:
16S rRNA gene sequencing using Sanger method
Type status:
Type
Other components
Active identification
Determined name:
Kyphosus sydneyanus Günther
Determiner:
Identification date:
Preferred name:
Kyphosus sydneyanus Günther
Division:
Chordata
Class:
Actinopterygii
Identification type:
Determination
Part affected:
Hindgut
Substrate:
Mannitol and fish gut fluid
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
Leigh
Georeferences:
Latitude and Longitude (WGS84):  -36.293  174.802 
Verbatim locality:
Rusty Ladder, Leigh
Verbatim collector:
Bikiran Pardesi
Standardised collector:
Bikiran Pardesi
Collectors reference no.:
G30
Verbatim date:
03 Aug 2016
Start date:
2016-08-03
Country:
New Zealand
New Zealand Area Codes:
Auckland
Culture flags
Price Category:
Category 3  (Contact depositor for media)
External links
GenBank:

OP501869 - 16S ribosomal RNA

CP092441 - genomic DNA

Note: full genome sequence

PRJNA783063

Literature:

Pardesi, Bikiran; Roberton, Anthony M.; Wollmuth, Emily M.; Angert, Esther R.; Rosendale, Douglas I.; White, William Lindsey; Clements, Kendall D. (2023) Chakrabartyella piscis gen. nov., sp. nov., a member of the family Lachnospiraceae, isolated from the hindgut of the marine herbivorous fish Kyphosus sydneyanus . International Journal of Systematic and Evolutionary Microbiology 73(10). DOI: 10.1099/ijsem.0.006100

Culture events
Isolated:
Actioned by:
Bikiran Pardesi (Reference number BP5G)
Date:
03 August 2016 (Verbatim: 03 Aug 2016)
Deposited:
Actioned by:
Bikiran Pardesi
Date:
02 November 2022 (Verbatim: 02 Nov 2022)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice