Systematics Collections Data

ICMP 24358 – Shinella An et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 24358
Culture type:
Bacterial Culture
Database record added:
15 November 2021
Database record updated:
01 April 2022
Components
Primary component
Active identification
Determined name:
Shinella An et al. 2006
Determiner:
Daniel T. Hudson
Determiners reference no.:
XGS7
Identification date:
2021-10-13 (Verbatim: 13 Oct 2021)
Preferred name:
Shinella An et al.
Division:
Pseudomonadota
Class:
Alphaproteobacteria
Order:
Hyphomicrobiales
Family:
Rhizobiaceae
Identification type:
Determination
Note:
Whole genome sequencing
Associations:
isolated from Xenopus laevis Daidin 1802
Other components
Active identification
Determined name:
Xenopus laevis Daidin 1802
Determiner:
Identification date:
Preferred name:
Xenopus laevis Daidin 1802
Division:
Chordata
Class:
Amphibia
Order:
Anura
Family:
Pipidae
Identification type:
Determination
Part affected:
Skin
Collection events
Primary collection event
Collection event type:
Unknown
Standard locality
Location:
Dunedin
Georeferences:
Latitude and Longitude (WGS84):  -45.86  170.5 
Verbatim locality:
Dunedin
Verbatim collector:
Caroline Beck
Standardised collector:
Caroline W. Beck
Verbatim date:
20 May 2020
Start date:
2020-05-20
Country:
New Zealand
New Zealand Area Codes:
Dunedin
Culture flags
Price Category:
Category 1
MPI:
Restricted Culture  (Isolated from imported animals)
Culture notes
Growth Conditions:
Nutrient agar, 30 degrees C
Characterised as:
Whole genome sequencing
External links
GenBank:

CP084760 - DUF3768 domain-containing protein, hypothetical protein, MobA/MobL family protein, ParA family protein, recombinase family protein, replication initiator protein A, thermonuclease family protein, Tn3 family transposase, tRNA-Gly, type II toxin-antitoxin system HicA family toxin, type II toxin-antitoxin system HicB family antitoxin

CP084759 - maiA, tnpB, istA, istB, sul1, cmx, tetR(A), tet(A), cadR

CP084758 - groES, groL, yihA, ccsB, msrP, ttcA, glmU, uvrA, asd, lplT, otsB, adhP, bioB, bioD, bioA, cueR, thiC, thiS, soxR, gmhB, glyS, glyQ, lnt, dksA, hslV, hslU, cobA, nirD, nirB, ntrB, ugpC, hppD, rrf, ptsP, mdoH, lipA, lipB, hemB, ybeY, ruvA, ruvB, pcaF, ppk2, metW, sppA, rsmB, queC, gap, tkt, iaaH, glnE, rrtA, purB, pyrF, ypfH, argS, lptA, lptB, mnmA, gspG, ssb, recQ, moaC, sucD, sucC, recA, rodA, mrdA, mreD, mreC, gatC, gatA, gatB, pyrE, xth, gpmI, cadA, arsH, gshA, corA, raiA, ptsN, hprK, fur, dapB, leuS, lptE, holA, thiL, rsmA, lptD, soxB, soxX, soxA, soxZ, soxY, soxC, cysW, cysT, ssuC, ssuD, ssuE, creC, creB, lptC, mnmE, yidC, yidD, rpmH, dnaA, dnaN, gyrB, queE, argC, rsmG, mnmG, gstA, proC, ubiA, katG, panB, panC, recG, queA, sigJ, argG, tgt, rlmJ, nadC, radA, arfB, tnpB, alr, dacB, ada, alkB, glpK, glpD, pssA, glcF, glcE, glk, metH, pxpB, glnK, amt, cobN, gshB, atpB, atpE, atpA, atpG, atpD, hemE, alaC, apaG, rpe, imuA, gph, trpE, ltaE, trpD, trpC, nagA, nagZ, tuf, secE, nusG, rplK, rplA, rplJ, rplL, rpoB, rpoC, rpsL, rpsG, fusA, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplN, rplX, rplE, rpsN, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY, infA, rpmJ, rpsM, rpsK, rpsD, rpoA, rplQ, hpaI, pdeM, yajC, secD, secF, dprA, def, fmt, htpX, pyk, fba, purE, tsaB, rimI, pepQ, metF, ahcY, metK, dapF, glmS, ubiG, prpF, acnD, prpC, fdhD, cphA, can, aceK, udk, gsiB, gsiC, gsiD, ylqF, rsmI, tldD, htpG, rplM, rpsI, erpA, tyrS, gnd, gspF, gspE, gspD, gspL, gspK, gspI, ilvA, coq7, cyaY, aroB, pilV, mlaE, mlaD, zwf, tal, pgi, zapD, coaE, pilB, ispB, rplU, rpmA, obgE, proB, grxD, prmC, prfA, hemA, miaB, ftsY, ffh, ccsA, prmA, accC, accB, aroQ, mtgA, aroE, fabG, mpl, hemL, ruvX, pyrR, grxC, secB, trmL, coxB, ctaD, cyoE, rpoH, ychF, lysS, rpmF, plsX, fabD, acpP, fabF, lepA, lepB, rnc, era, recO, acpS, kduI, kduD, kdgR, xdhB, xdhA, guaD, rsgA, cysD, ybiB, rmuC, folD, aceE, aceF, lpdA, maiA, pgeF, phaC, phbB, glnA, ntrC, msrB, hmgA, fahA, egtD, egtB, pepN, prfB, ggt, arsC, trxC, plsY, recJ, ppk1, xseB, dxs, lysA, ahpC, ahpF, polA, gbpA, purU, tadA, pobA, pcaH, pbpC, alaS, fliR, fliQ, fliP, fliN, fliM, fliJ, fliI, fliG, fliF, fliE, fliS, fliD, flhD, flhC, motA, motB, cheY, flhA, flhF, flgL, flgK, flgJ, flgG, flgF, flgE, flgC, flgB, flgA, flgM, kefC, metG, minC, minD, minE, chrA, dbpA, gtfA, ispD, map, ispF, ompR, phaR, rimO, smpB, guaB, guaA, adk, kdsB, lpxK, xseA, ccoS, ccoN, ccoO, ccoP, ccoG, fnr, hemN, icd, clpS, clpA, cysS, tilS, ubiM, mltB, nhaA, acs, ilvD, lgt, dnaQ, aat, acnA, hydA, preA, tam, lspA, ileS, prsT, murB, orn, cyoD, cyoC, cyoB, cyoA, cdd, deoC, deoA, trmB, coaBC, dut, bamC, dapA, parC, rpiA, mnmC, ettA, trpS, purN, rpmG, rpmB, trxB, lolA, cysM, galU, sbcB, cysC, lptG, lptF, prsK, prsR, xrtA, acnB, sdhC, sdhD, sdhA, gltA, rbsK, purL, rlmB, upp, gmd, scpA, meaB, leuC, leuD, leuB, truA, trpB, trpA, accD, folC, purF, gltX, lexA, prmB, dapE, dapD, dapC, queF, smc, ligA, istA, istB, sulP, cydB, cydX, hmpA, norR, metE, tmk, mltG, aceA, queG, tsaE, mutL, miaA, mnhG, eda, edd, pdxH, msrA, ubiD, nrdR, ribD, ribB, ribH, nusB, ybgC, tolQ, tolR, tolA, pcp, selD, flgH, flhB, fliB, lafA, gcvT, gcvH, gcvP, aroC, kbl, nuoN, nuoL, nuoK, nuoI, nuoH, nuoG, nuoF, nuoE, secG, tpiA, pnp, rpsO, tsaD, fdx, hscA, hscB, iscA, iscU, iscR, uvrB, phaZ, rsxB, nth, zapB, ssrS, rpsU, pmbA, mog, cysE, mutS, kdsA, eno, ftsB, pnuC, dusA, typA, truB, rbfA, infB, nusA, rimP, fabI, narI, narJ, narH, ssrA, gyrA, serC, pheA, rpsA, lapB, dnaE, gluQRS, trxA, rho, phoR, phoB, phoU, pstB, pstA, pstC, pstS, glmM, folP, ftsH, greA, carB, carA, rlmD, rpoS, surE, pgsA, uvrC, earP, efp, ilvB, yaaA, nhaR, mnmH, bla, rplS, trmD, rimM, rpsP, folK, pcnB, hda, murJ, rpsT, argF, torT, speD, thrC, mdtD, kynB, kynU, kynA, eutC, serS, ispH, radC, cheD, hemW, rdgB, rph, gmk, rpoZ, greB, hemC, ppc, pncB, argH, dinB, paaZ, paaK, paaJ, paaC, paaB, paaA, paaF, paaI, moaA, mfd, serB, rraA, nadA, nadB, clpB, crcB, modB, modA, mobA, selB, selA, fdhE, fdxH, fdnG, apbC, ybgF, pal, tolB, rng, rlmH, rsfS, nadD, hemF, purD, rnhA, gloB, recR, dnaX, ffs, hrpA, argA, dnaG, rpoD, hemH, grpE, dnaK, dnaJ, dnaB, rplI, rpsR, priB, rpsF, fabR, ppsA, rnhB, lpxB, lpxA, fabZ, lpxD, bamA, rseP, ispC, uppS, frr, pyrH, tsf, rpsB, rnr, hflC, hflK, hflX, hfq, der, bamB, hisS, ispG, pilW, rlmN, ndk, scpB, odhB, murI, lon, clpX, clpP, tig, hpnC, hpnD, hpnE, pbpG, ilvC, ilvN, ppa, pheT, rplT, rpmI, infC, thrS, pcaB, hchA, rocF, hutF, hutG, hutI, hutC, hutH, clsB, nudB, aspS, ubiB, galE, rfbB, rfbD, rfbA, rfbC, wecB, xrtB, epsF, epsE, ubiE, ugpB, ugpA, ugpE, ugpQ, ureG, bfr, kdpE, kdpC, kdpB, kdpA, kdpF, fghA, xdhC, uraH, puuE, uraD, urtE, urtD, urtC, urtB, urtA, ureC, ureE, argJ, secA, petA, mscL, pdxA, tatC, tatB, tatA, hisI, slmA, argB, dtd, nudC, dusB, purH, ruvC, lpxC, ftsZ, ftsA, murC, murG, ftsW, murD, mraY, murF, ftsL, rsmH, mraZ, rnpB, cysK, pyrC, ribA, hrcA, recN, rapZ, mutY, mutM, ispE, pth, cobU, bluB, cobO, cbiB, cobT, cobS, coaD, rsmD, hisF, hisA, hisH, hisB, hisC, hisD, hisG, cheB

PRJNA763310 - Sequences of Bacteria Isolated from Xenopus laevis

Literature:

Hudson, D. T.; Chapman, P. A.; Day, R. C.; Morgan, X. C.; Beck, C. W. (2021) Complete Genome Sequences of Kinneretia sp. Strain XES5, Shinella sp. Strain XGS7, and Vogesella sp. Strain XCS3, Isolated from Xenopus laevis Skin .Microbiology Resource Announcements10(50). DOI: 10.1128/MRA.01050-21

Culture events
Isolated:
Actioned by:
Daniel T. Hudson (Reference number XGS7)
Date:
28 May 2020 (Verbatim: 28 May 2020)
Deposited:
Note:
ORCID 0000-0003-3120-3532 University of Otago
Actioned by:
Daniel T. Hudson
Date:
08 November 2021 (Verbatim: 08 Nov 2021)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice