Specimen Details

ICMP 11920 – Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 11920

Culture type:

Bacterial Culture

Database record added:

25 January 2002

Database record updated:

28 February 2023

Components

Primary component

Active identification

Determined name:

Xanthomonas campestris pv. oryzae (Ishiyama 1922) Dye 1978

Determiner:

Identification date:

Preferred name:

Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al.

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Lysobacterales

Family:

Lysobacteraceae

Identification type:

Determination

Associations:

isolated from Oryza sativa L.

Other identifications

Identification

Determined name:

Xanthomonas campestris pv. oryzae

Determiner:

Identification date:

Preferred name:

Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al.

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Oryza sativa L.

Determiner:

Identification date:

Preferred name:

Oryza sativa L.

Division:

Tracheophyta

Class:

Liliopsida

Order:

Poales

Family:

Gramineae

Vernacular name:

rice cv. IR20

Identification type:

Determination

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Kayes, Mali

Georeferences:

Latitude and Longitude (WGS84): 14.45 -11.433333

Verbatim locality:

Kayes, Mali

Verbatim collector:

J.L. Notteghem

Standardised collector:

J. L. Notteghem

Verbatim date:

1979

Start date:

1979

Country:

Mali

Georeferences:

Latitude and Longitude (WGS84): 14.45 -11.433333

Culture flags

MPI:

Restricted Culture

Price Category:

Category 2

MPI:

Unwanted Organism

External links

GenBank:

CP033183 - dnaA, recF, gyrB, cls, ntrC, amt, glnA, egtD, egtB, kduD, glgB, treS, secB, ubiB, zapE, dkgB, hrpB, uraH, uraD, puuE, purU, msuE, kdgT, pobA, pcaF, pcaH, pcaG, pcaD, pcaC, mnmG, lpxO, bioC, bioH, bioF, bioB, hpaP, glgA, treZ, malQ, treY, glgX, pdhA, hppD, yegS, trpD, coq7, bfr, erpA, yccS, purD, purH, accC, aroQ, sppA, dprA, rsmB, ribA, rpoD, rho, trxA, rhlB, ftsE, rpoH, aceE, tssI, treA, mdoH, xerC, hslU, ubiE, mreC, mreD, mrdA, rodA, mltB, lipB, lipA, gnd, folK, gluP, nagA, pgaD, pgaC, pgaB, pgaA, betA, gfa, fghA, ettA, ribD, ribB, nusB, thiL, kdpA, kdpB, rsmI, rnpB, mraZ, rsmH, ftsL, murF, ftsW, murG, ftsA, ftsZ, secA, metF, dusB, hemP, apaG, rsmA, pdxA, lptD, rlmM, msrA, ahpF, ahpC, prmC, pip, sufT, ybaK, ppk2, moaB, prfA, lolB, ychF, tuf, secE, nusG, rplK, rpoB, rpoC, fusA, secY, rplQ, typA, kbl, cysT, cysW, lpxH, ppx, ppk1, phoR, phoB, grxC, gspE, gspG, gspH, gspD, pncB, arsC, grxD, rsgA, phbB, leuC, leuD, leuB, ilvC, thiC, mpl, azu, hemL, rpiA, ssrS, zapA, hemW, rdgB, recG, tkt, modC, gap, pgk, pyk, cysK, cobA, cysI, cysN, mscL, trmB, thiS, pilB, sucD, bamD, rluD, pgeF, otsA, otsB, tesB, uvrA, rplU, obgE, murJ, cyoA, cyoB, cyoC, cyoD, radA, rimM, trmD, katG, mutS, clpB, btuB, cobO, cobT, bla, aspS, ruvC, ruvA, ruvB, ybgC, tolQ, tolR, tolA, tolB, pal, ybgF, queE, queC, recQ, hrpA, pqqE, pqqD, pqqC, pqqB, pqqA, mrcB, tsaB, nudE, cysQ, gcvT, mmsA, mmsB, rpoE, lepB, recO, rlmD, pdeM, thpR, mprF, rnfB, phaZ, lpxD, bamA, rseP, uppS, rpsB, map, dapD, dapE, parC, asnB, ssrA, bamE, recN, hrcA, grpE, dnaK, dnaJ, lpdA, sucB, fucP, rnr, rlmB, rnt, pstB, pstA, pstC, pstS, nth, rlmL, kynU, rpsR, smc, zipA, ligA, genX, mtnA, gyrA, thrS, mutY, ftsY, htpG, rsmD, ggt, queA, yajC, secD, secF, pfkB, ptsP, fdhD, potA, petA, rnd, queG, tsaE, mutL, phaR, dbpA, epmB, efp, ubiG, yidD, dksA, proB, cydX, cydB, cydD, cydC, ccmE, ccmD, ccmB, ccmA, scpB, lapB, galU, folD, guaB, mntR, tadA, phaE, phaC, pgl, zwf, ugpC, sdhC, sdhD, lolD, msbA, uvrC, pgsA, tssB, tssC, tssE, tssF, tssG, tssH, tagH, tssK, tssL, tssM, tagF, tssA, moeB, der, bamB, pilW, rlmN, crcB, lolA, trxB, clpA, clpS, mnmA, flgM, flgA, flgB, flgC, flgD, flgF, flgG, flgH, flgI, flgJ, flgK, flgL, fliS, rpoN, fliE, fliF, fliG, fliJ, fliM, fliN, fliO, fliP, fliR, flhB, flhA, flhF, cheY, motD, cheD, acnA, lysS, prfB, recJ, greA, yeiP, mtnC, hisF, hisA, hisH, hisB, hisD, panB, pcnB, xylA, xylB, thiD, csrA, recX, recA, hflX, miaA, folP, yhbY, surE, truD, ftsB, parE, aroA, pheA, serC, msrP, msrQ, hutC, hutH, hutG, uvrB, pilV, purE, nadC, pnp, truB, rbfA, nusA, rimP, nuoN, nuoK, nuoH, nuoG, nuoF, nuoE, secG, trpB, truA, psd, greB, rimO, apbC, tilS, pmbA, tldD, rlmH, rsfS, creC, rlmJ, ssb, ruvX, sufB, sufC, sufD, murA, lptC, lptA, lptB, raiA, rapZ, mgtE, soxR, pdxH, hcp, tssJ, minC, minD, minE, gcvP, imuA, lexA, hflK, prpF, acnD, prpR, mltG, fabF, fabG, fabD, recR, ffs, moaC, moaA, gloB, clpX, xerD, lptG, lptF, rimI, pssA, rfbD, rfbC, rfbA, rfbB, maiA, queD, bioD, gph, gloA, glmS, glmU, alr, msrB, motA, motB, queF, folB, tsaD, ctaD, coxB, putA, rrf, xth, coaBC, speA, fabR, rarD, yedA, rocF, dusA, dinG, hemB, panE, polA, ligK, rpmG, rsmG, acs, glyQ, tatC, tatB, rdgC, ttcA, plsB, rep, folE, proP, recD, recB, recC, mlaD, rmuC, mnmE, yidC

Note: from CFBP 1951

PRJNA497307 - Xanthomonas oryzae pv. oryzae isolates from African countries Genome sequencing and assembly

Note: from CFBP 1951

Literature:

Triplett, Lindsay R.; Cohen, Stephen P.; Heffelfinger, Christopher; Schmidt, Clarice L.; Huerta, Alejandra I.; Tekete, Cheick; Verdier, Valerie; Bogdanove, Adam J.; Leach, Jan E. (2016) A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola .The Plant Journal87(5)472-483. DOI: 10.1111/tpj.13212

Note: as CFBP 1951

Doucouré, Hinda; Pérez-Quintero, Alvaro L.; Reshetnyak, Ganna; Tekete, Cheick; Auguy, Florence; Thomas, Emilie; Koebnik, Ralf; Szurek, Boris; Koita, Ousmane; Verdier, Valérie; Cunnac, Sébastien (2018)Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains.Frontiers in Microbiology9. DOI: 10.3389/fmicb.2018.01657

Note: as CFBP1951

Hutin, Mathilde; Sabot, François; Ghesquière, Alain; Koebnik, Ralf; Szurek, Boris (2015)A knowledge-based molecular screen uncovers a broad-spectrumOsSWEET14resistance allele to bacterial blight from wild rice.The Plant Journal84(4)694-703. DOI: 10.1111/tpj.13042

Note: as CFBP 1951

Gonzalez, Carolina; Szurek, Boris; Manceau, Charles; Mathieu, Thierry; Séré, Yacouba; Verdier, Valérie (2007)Molecular and Pathotypic Characterization of New Xanthomonas oryzae Strains from West Africa.Molecular Plant-Microbe Interactions®20(5)534-546. DOI: 10.1094/MPMI-20-5-0534

Note: as CFBP 1951

Lang, Jillian M.; Langlois, Paul; Nguyen, Marian Hanna R.; Triplett, Lindsay R.; Purdie, Laura; Holton, Timothy A.; Djikeng, Appolinaire; Vera Cruz, Casiana M.; Verdier, Valérie; Leach, Jan E. (2014)Sensitive Detection of Xanthomonas oryzae Pathovars oryzae and oryzicola by Loop-Mediated Isothermal Amplification.Applied and Environmental Microbiology80(15)4519-4530. DOI: 10.1128/AEM.00274-14

Note: as CFBP1951

HAJRI, AHMED; BRIN, CHRYSTELLE; ZHAO, SHUAI; DAVID, PERRINE; FENG, JIA-XUN; KOEBNIK, RALF; SZUREK, BORIS; VERDIER, VALÉRIE; BOUREAU, TRISTAN; POUSSIER, STEPHANE (2012)Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae.Molecular Plant Pathology13(3)288-302. DOI: 10.1111/j.1364-3703.2011.00745.x

Note: as CFBP 1951

Lang, Jillian M.; Hamilton, John P.; Diaz, Maria Genaleen Q.; Van Sluys, Marie Anne; Burgos, Ma. Ruby G.; Vera Cruz, Casiana M.; Buell, C. Robin; Tisserat, Ned A.; Leach, Jan E. (2010)Genomics-Based Diagnostic Marker Development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola.Plant Disease94(3)311-319. DOI: 10.1094/PDIS-94-3-0311

Note: as CFBP 1951

Culture events

Isolated:

Actioned by:

J. L. Notteghem (Reference number IR20)

Date:

1979 (Verbatim)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

Culture Collection of Plant Pathogenic Bacteria of France (Reference number CFBP 1951)

Date:

01 January 1994 (Verbatim: 01 Jan 1994)

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice