Systematics Collections Data

ICMP 18302 – Mesorhizobium opportunistum Nandasena et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 18302
Type status:
Type strain
Culture type:
Bacterial Culture
Database record added:
05 January 2010
Database record updated:
14 April 2025
Components
Primary component
Active identification
Determined name:
Mesorhizobium opportunistum Nandasena et al. 2009
Determiner:
Identification date:
2009 (Verbatim: 2009)
Preferred name:
Mesorhizobium opportunistum Nandasena et al.
Division:
Pseudomonadota
Class:
Alphaproteobacteria
Order:
Hyphomicrobiales
Family:
Phyllobacteriaceae
Identification type:
Determination
Associations:
isolated from Biserrula pelecinus L.
Other components
Active identification
Determined name:
Biserrula pelecinus L.
Determiner:
Identification date:
Preferred name:
Biserrula pelecinus L.
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Fabales
Family:
Leguminosae
Identification type:
Determination
Part affected:
root nodule
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
[Unknown]
Verbatim locality:
[Unknown]
Verbatim collector:
Verbatim date:
Country:
Australia
Culture flags
MPI:
Restricted Culture
Price Category:
Category 2
Culture notes
Growth Conditions:
YMA, R2A @ 26 C for 3-7 days
External links
GenBank:

[TRUNCATED] CP002279 - (2Fe-2S)-binding domain protein, (Glutamate--ammonia-ligase) adenylyltransferase, (NiFe) hydrogenase maturation protein HypF, (p)ppGpp synthetase I, SpoT/RelA, (Uracil-5)-methyltransferase, 1,4-alpha-glucan branching enzyme, 16S ribosomal RNA, 16S rRNA processing protein RimM, 17 kDa surface antigen, 1-aminocyclopropane-1-carboxylate deaminase, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, 2',5' RNA ligase, 2,5-didehydrogluconate reductase, 20S proteasome A and B subunits, 23S ribosomal RNA, 2'-5' RNA ligase, 2-amino-3-ketobutyrate coenzyme A ligase, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein, 2-aminoethylphosphonate ABC transporter, permease protein, 2-aminoethylphosphonate aminotransferase, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 2-dehydro-3-deoxygalactonokinase, 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphooctonate aldolase, 2-dehydropantoate 2-reductase, 2-deoxycytidine 5-triphosphate deaminase, 2-deoxy-D-gluconate 3-dehydrogenase, 2-hydroxy-3-oxopropionate reductase, 2-isopropylmalate synthase, 2-isopropylmalate synthase/homocitrate synthase family protein, 2-keto-gluconate dehydrogenase subunit, 2OG-Fe(II) oxygenase, 2-oxoglutarate dehydrogenase, E1 subunit, 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, 2-polyprenylphenol 6-hydroxylase, 3'(2'),5'-bisphosphate nucleotidase, 3,4-dihydroxy-2-butanone 4-phosphate synthase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase, 30S ribosomal protein S11, 30S ribosomal protein S13, 30S ribosomal protein S17, 3'-5' exonuclease, 3-carboxy-cis,cis-muconate cycloisomerase, 3-dehydroquinate dehydratase, type II, 3-dehydroquinate synthase, 3-demethylubiquinone-9 3-methyltransferase, 3-deoxy-D-manno-octulosonatecytidylyltransferase, 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein, 3-hydroxybutyrate dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, 3-isopropylmalate dehydratase, large subunit, 3-isopropylmalate dehydratase, small subunit, 3-isopropylmalate dehydrogenase, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring), 3-methyl-2-oxobutanoatehydroxymethyltransferase, 3-oxoacyl-(acyl-carrier-protein) reductase, 3-oxoacyl-(acyl-carrier-protein) synthase 2, 3-oxoacyl-(acyl-carrier-protein) synthase III, 3-oxoadipate CoA-transferase, 3-oxoadipate enol-lactonase, 3-phosphoshikimate 1-carboxyvinyltransferase, 40-residue YVTN family beta-propeller repeat protein, 4-aminobutyrate aminotransferase, 4-carboxymuconolactone decarboxylase, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, 4-diphosphocytidyl-2C-methyl-D-erythritolkinase, 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase, 4Fe-4S ferredoxin iron-sulfur binding domain protein, 4-hydroxy-2-oxovalerate aldolase, 4-hydroxybenzoate 3-monooxygenase, 4-hydroxybenzoate polyprenyl transferase, 4-hydroxyphenylacetate 3-hydroxylase, 4-hydroxyphenylpyruvate dioxygenase, 4-hydroxyproline epimerase, 4-hydroxythreonine-4-phosphate dehydrogenase, 4-oxalocrotonate tautomerase, 4'-phosphopantetheinyl transferase, 5,10-methylenetetrahydrofolate reductase, 50S ribosomal protein L3, 50S ribosomal protein L36, 5-aminolevulinic acid synthase, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, 5-carboxymethyl-2-hydroxymuconate isomerase, 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, 5-formyltetrahydrofolate cyclo-ligase, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, 5-methylthioribose kinase, 5'-Nucleotidase domain protein, 5-oxoprolinase (ATP-hydrolyzing), 5S ribosomal RNA, 6,7-dimethyl-8-ribityllumazine synthase, 6-aminohexanoate-dimer hydrolase, 6-phosphogluconate dehydratase, 6-phosphogluconate dehydrogenase NAD-binding protein, 6-phosphogluconate dehydrogenase, decarboxylating, 6-phosphogluconolactonase, 6-pyruvoyl tetrahydropterin synthase and hypothetical protein, 6S RNA, 7-cyano-7-deazaguanine reductase, 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, 8-amino-7-oxononanoate synthase, A/G-specific adenine glycosylase, aa3 type cytochrome c oxidase subunit IV, AAA ATPase, AAA ATPase central domain protein, ABC sugar transporter, periplasmic ligand binding protein, ABC transporter binding protein, ABC transporter domain protein, ABC transporter periplasmic solute-binding protein, ABC transporter related protein, ABC transporter substrate-binding protein, ABC transporter, ATPase subunit, ThiQ subfamily, ABC transporter, periplasmic binding protein, thiB subfamily, ABC-2 type transporter, ABC-2 type transporter, NodJ family, ABC-3 protein, ABC-type dipeptide/oligopeptide/nickel transport system, permease component, ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic component, ABC-type sugar transport system peri

Note: from WSM2075

PRJNA33861 - This strain will be used for comparative genome analysis

Note: from WSM2075

Literature:

Haskett, Timothy L.; Terpolilli, Jason J.; Bekuma, Amanuel; O’Hara, Graham W.; Sullivan, John T.; Wang, Penghao; Ronson, Clive W.; Ramsay, Joshua P. (2016)Assembly and transfer of tripartite integrative and conjugative genetic elements.Proceedings of the National Academy of Sciences113(43)12268-12273. DOI: 10.1073/pnas.1613358113

Reeve, Wayne; Nandasena, Kemanthi; Yates, Ron; Tiwari, Ravi; O’Hara, Graham; Ninawi, Mohamed; Chertkov, Olga; Goodwin, Lynne; Bruce, David; Detter, Chris; Tapia, Roxanne; Han, Shunseng; Woyke, Tanja; Pitluck, Sam; Nolan, Matt; Land, Miriam; Copeland, Alex; Liolios, Konstantinos; Pati, Amrita; Mavromatis, Konstantinos; Markowitz, Victor; Kyrpides, Nikos; Ivanova, Natalia; Goodwin, Lynne; Meenakshi, Uma; Howieson, John (2013)Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075T.Standards in Genomic Sciences9(2)294-303. DOI: 10.4056/sigs.4538264

Culture events
Deposited:
Actioned by:
Bevan S. Weir
Date:
05 January 2010 (Verbatim: 05 Jan 2010)
Transferred via:
Actioned by:
HAMBI mBRC (Reference number 3007)
Transferred from:
Actioned by:
Kemanthi Nandasena (Reference number WSM2075)
Duplicates
Belgian Coordinated Collections of Microorganisms: LMG 24607
Direction:
Duplicate
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice