Systematics Collections Data

ICMP 8790 – Leifsonia xyli subsp. cynodontis (Davis et al. 1984) Evtushenko et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 8790
Type status:
Type strain
Culture type:
Bacterial Culture
Database record added:
25 January 2002
Database record updated:
24 July 2020
Components
Primary component
Active identification
Determined name:
Leifsonia xyli subsp. cynodontis (Davis et al. 1984) Evtushenko et al.
Determiner:
B.S. Weir
Identification date:
2017-10-18 (Verbatim: 18 Oct 2017)
Preferred name:
Leifsonia xyli subsp. cynodontis (Davis et al. 1984) Evtushenko et al.
Division:
Actinomycetota
Class:
Actinobacteria
Order:
Actinomycetales
Family:
Microbacteriaceae
Identification type:
Determination
Associations:
isolated from Cynodon dactylon (L.) Pers.
Other identifications
Identification
Determined name:
Clavibacter xyli subsp. cynodontis
Determiner:
Identification date:
Preferred name:
Leifsonia xyli subsp. cynodontis (Davis et al. 1984) Evtushenko et al.
Active:
no
Identification type:
Received as
Identification
Determined name:
Clavibacter xyli subsp. cynodontis Davis et al. 1984
Determiner:
Identification date:
Preferred name:
Leifsonia xyli subsp. cynodontis (Davis et al. 1984) Evtushenko et al.
Active:
no
Identification type:
Determination
Other components
Active identification
Determined name:
Cynodon dactylon (L.) Pers.
Determiner:
Identification date:
Preferred name:
Cynodon dactylon (L.) Pers.
Division:
Tracheophyta
Class:
Liliopsida
Order:
Poales
Family:
Gramineae
Vernacular name:
Indian doab, Bermuda grass
Identification type:
Determination
Part affected:
causes stunting disease - affects xylem
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Verbatim locality:
[Unknown]
Verbatim collector:
Verbatim date:
Aug 1980
Start date:
1980-08
Country:
Taiwan
Culture flags
MPI:
Restricted Culture
Price Category:
Category 3
External links
GenBank:

[TRUNCATED] CP006734 - (dimethylallyl)adenosine tRNA methylthiotransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase, 16S ribosomal RNA, 16S ribosomal RNA methyltransferase RsmE, 16S rRNA methyltransferase GidB, 16S rRNA-processing protein RimM, 1-acylglycerol-3-phosphate O-acyltransferase, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 1-deoxy-D-xylulose-5-phosphate synthase, 1-phosphofructokinase, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, 23S ribosomal RNA, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, 2-dehydro-3-deoxygluconokinase, 2-dehydro-3-deoxyphosphooctonate aldolase, 2-dehydropantoate 2-reductase, 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, 2-isopropylmalate synthase, 2-oxoglutarate decarboxylase, 3,4-dihydroxy-2-butanone-4-phosphate synthase, 30S ribosomal protein S1, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S2, 30S ribosomal protein S20, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 3-dehydroquinate dehydratase, 3-dehydroquinate synthase, 3-hydroxyacyl-CoA dehydrogenase, 3-isopropylmalate dehydrogenase, 3-methyl-2-oxobutanoate hydroxymethyltransferase, 3-methyladenine DNA glycosylase, 3-oxoacyl-ACP reductase, 3-oxoacyl-ACP synthase, 3-phosphoshikimate 1-carboxyvinyltransferase, 4-amino-4-deoxychorismate lyase, 4-aminobutyrate aminotransferase, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, 4-nitrophenylphosphatase, 4'-phosphopantetheinyl transferase, 50S ribosomal protein L1, 50S ribosomal protein L10, 50S ribosomal protein L11, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L2, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L3, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L7/L12, 50S ribosomal protein L9, 5-formyltetrahydrofolate cyclo-ligase, 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxilase, 5S ribosomal RNA, 6,7-dimethyl-8-ribityllumazine synthase, 6-phosphofructokinase, 6-phosphogluconate dehydrogenase, 6-phosphogluconolactonase, ABC transporter ATP binding protein, ABC transporter ATP-binding protein, ABC transporter ferrichrome-binding protein, ABC transporter integral membrane subunit, ABC transporter membrane component, ABC transporter NBP/MSD fusion protein, ABC transporter NBP/MSD fusion protein (pimaricin), ABC transporter permease, ABC transporter solute binding protein, ABC transporter solute-binding protein, ABC transporter substrate binding protein, ABC transporter sugar binding protein, ABC- transporter, ATP-binding protein, ABC-type cobalt transport system, ABC-type cobalt transport system, permease, ABC-type glycine betaine transport, ATP-binding protein, ABC-type glycine betaine transport, permease, ABC-type glycine betaine transport, substrate-binding protein, ABC-type Mn2+/Zn2+ transport systems, permease, ABC-type transport systems, periplasmic component, ABC-type transporter, permease, acetate kinase, acetolactate synthase 1 catalytic subunit, acetolactate synthase 3 regulatory subunit, acetyl-CoA acetyltransferase, acetyl-CoA acyltransferase, acetylglutamate kinase, acetylornithine aminotransferase, acetyltransferase, aconitate hydratase, ACP S-malonyltransferase, acyl carrier protein, acylaminoacyl peptidase, acyl-CoA dehydrogenase, acyl-CoA oxidase, acyl-CoA thioesterase, adenine glycosylase, adenosine deaminase, adenylate kinase, adenylosuccinate lyase, adenylosuccinate synthetase, AhpC/TSA family protein, alanine dehydrogenase, alanine racemase, alanyl-tRNA synthetase, albicidin efflux pump, alcohol dehydrogenase, aldehyde dehydrogenase, alpha-amylase, alpha-ketoglutarate decarboxylase, amidase, amidophosphoribosyltransferase, amino acid permease, aminopeptidase, aminotransferase, ammonium transporter, AMP nucleosidase, anthranilate phosphoribosyltransferase, anthranilate synthase component I, anthranilate synthase component II, antifreeze glycopeptide AFGP po

Note: from DSM 46306

PRJNA215687 - Leifsonia xyli subsp. cynodontis DSM 46306 Genome sequencing

Note: from DSM 46306

Literature:

Evtushenko, L I; Dorofeeva, L V; Subbotin, S A; Cole, J R; Tiedje, J M (2000)Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov. International Journal of Systematic and Evolutionary Microbiology 50(1)371-380. DOI: 10.1099/00207713-50-1-371

Sasaki, J.; Chijimatsu, M.; Suzuki, K.-i. (1998)Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov.International Journal of Systematic Bacteriology48(2)403-410. DOI: 10.1099/00207713-48-2-403

Monteiro-Vitorello, Claudia Barros; Zerillo, Marcelo Marques; Van Sluys, Marie-Anne; Camargo, Luis Eduardo Aranha; Kitajima, João Paulo (2013) Complete Genome Sequence of Leifsonia xyli subsp. cynodontis Strain DSM46306, a Gram-Positive Bacterial Pathogen of Grasses .Genome Announcements1(6). DOI: 10.1128/genomeA.00915-13

Davis, M. J.; Gillaspie, A. G.; Vidaver, A. K.; Harris, R. W. (1984)Clavibacter: a New Genus Containing Some Phytopathogenic Coryneform Bacteria, Including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., Pathogens That Cause Ratoon Stunting Disease of Sugarcane and Bermudagrass Stunting Disease.International Journal of Systematic Bacteriology34(2)107-117. DOI: 10.1099/00207713-34-2-107

Culture events
Isolated:
Date:
01 August 1980 (Verbatim: 01 Aug 1980)
Deposited:
Note:
Derived from earliest batch date
Actioned by:
M. J. Davis (Reference number TBIA)
Date:
01 December 1984 (Verbatim: 01 Dec 1984)
Duplicates
Japan Collection of Microorganisms: JCM 9733
Direction:
Duplicate
Belgian Coordinated Collections of Microorganisms: LMG 7552
Direction:
Duplicate
American Type Culture Collection: ATCC 33973
Direction:
Duplicate
Assigned reference numbers
NZRCCNo:
NZRCC 10495
PDDCC:
PDDCC 8790
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice