Specimen Details

ICMP 3918 – Pseudomonas amygdali Psallidas & Panagopoulos 1975

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 3918

Type status:

Type strain

Culture type:

Bacterial Culture

Database record added:

25 January 2002

Database record updated:

03 March 2021

Components

Primary component

Active identification

Determined name:

Pseudomonas amygdali Psallidas & Panagopoulos 1975

Determiner:

Identification date:

Preferred name:

Pseudomonas amygdali Psallidas & Panagopoulos 1975

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Pseudomonadales

Family:

Pseudomonadaceae

Identification type:

Determination

Associations:

isolated from Prunus dulcis (Mill.) D.A. Webb

Other identifications

Identification

Determined name:

Pseudomonas amygdali

Determiner:

Identification date:

Preferred name:

Pseudomonas amygdali Psallidas & Panagopoulos 1975

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Prunus dulcis (Mill.) D.A. Webb

Determiner:

Identification date:

Preferred name:

Prunus amygdalus Batsch

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Rosales

Family:

Rosaceae

Vernacular name:

Almond

Identification type:

Determination

Part affected:

Leaf

Present:

Collection events

Primary collection event

Collection event type:

Field

Verbatim locality:

[Unknown]

Verbatim collector:

Verbatim date:

Country:

Greece

Culture flags

MPI:

Restricted Culture

Price Category:

Category 2

MPI:

Unwanted Organism

Culture notes

Growth Conditions:

Medium PDA or yeast malt agar or yeast salts agar (5 days)

External links

GenBank:

PRJNA295880 - Pseudomonas amygdali strain:ICMP 3918 Genome sequencing and assembly

LJPQ00000000 - genomic DNA

PRJNA292453 - Pseudomonas Genome sequencing and assembly

LKBW00000000 - genomic DNA

LC364096 - gyrB

KU161318 - dnaX

LJPQ01000000

NZ_CP184888 - xopAD, istB, istA, mobQ, relB, hopD1

NZ_CP184887 - genomic DNA

CP184888 - xopAD, istB, istA, mobQ, hopD1

[TRUNCATED] CP184887 - rhtA, rfaH, ssuE, pssA, ligD, ssuD, iolD, iolB, iolE, clsB, nagZ, psrA, lexA, sulA, topA, fadA, fadB, yegS, fahA, hmgA, hppD, maiA, glcD, glcE, glcF, csrA, katB, rarD, zapE, ampC, ada, efeU, efeO, efeB, catA, catC, antC, antB, antA, ccmI, ccmE, ccmD, ccmB, ccmA, recR, rlmM, acnA, ccoN, ccoO, ccoP, ccoG, ccoS, hemN, fnr, motD, fliA, fleN, flhF, flhA, flhB, fliR, fliP, fliO, fliN, fliM, fliL, fliJ, fliI, fliH, fliG, fliF, fliE, fleQ, fliT, fliS, fliD, flgK, flgJ, flgH, flgG, flgE, flgD, flgC, flgB, cynS, cynR, cheR, flgA, flgM, vioA, ppnN, pobA, dapA, pdxA, tnpA, tnpC, tnpB, mgtE, bamE, alaS, ltaE, astE, astB, astD, astA, aruF, argR, acs, phhA, arfB, rluB, scpB, acnB, mntP, araD1, pepN, msrB, htpX, earP, ihfB, rpsA, cmk, pheA, serC, gyrA, mtnA, ubiG, mupP, rmuC, cobC, cobT, cobU, cobD, cbiB, bluB, cobO, hda, purM, purN, mazG, relA, rlmD, cysM, arsC, wrbA, ttcA, fhuF, recQ, pap, mnmC, ngg, def, bamA, hrpA, fadD1, fadD2, rapA, livH, livG, pdxH, dinG, pdeM, dcd, apbC, metG, rsxB, nth, pyrC, rnt, bfr, grxD, argF, ybaK, glpK, glpD, metR, ddlA, lon, cmoA, cmoB, pdxJ, recO, era, rnc, lepB, lepA, rpoE, nadB, ung, atzF, yiaY, bglX, pcaF, pcaR, purU, mvaT, sbcB, pyk, olsB, sodB, colR, groL, argJ, secA, lpxC, ftsZ, ftsA, murC, murG, ftsW, murD, mraY, ftsL, rsmH, mraZ, rnpB, rsmI, rpsI, rplM, cysN, cysD, algW, hisC, hisD, hisG, murA, mlaD, mlaE, lptC, lptA, lptB, hpf, ptsN, rapZ, pmbA, yjgA, tldD, rng, mreD, mreC, mreB, gatC, gatA, gatB, pnp, rpsO, truB, rbfA, infB, nusA, rimP, secG, tpiA, glmM, folP, ftsH, rlmE, greA, carB, carA, dapB, dnaJ, dnaK, grpE, recN, fur, smpB, ssrA, katG, nhaA, garD, kdgD, ettA, glyA, yjiA, radA, mscL, cydB, trmA, tesB, yedA, hrpB, amn, thiE, hemL, miaB, ybeY, lnt, leuS, lptE, holA, arfA, lipA, lipB, mltB, rodA, mrdA, rlmH, rsfS, nadD, speA, pbpC, cpaB, aroQ, accB, accC, prmA, dusB, fis, purH, purD, retS, cobJ, cobG, cbiE, urtA, urtB, urtC, urtD, urtE, ureA, ttr, ureC, cbpA, osmE, ureE, ureG, ribA, thiL, nusB, ribE, ribBA, ribD, nrdR, trxA, hsdR, istB, istA, uvrA, rplQ, rpsD, rpsK, rpsM, rpmJ, secY, rplO, rpmD, rpsE, rplR, rplF, rpsH, rpsN, rplE, rplX, rplN, rpsQ, rpmC, rplP, rpsC, rplV, rpsS, rplB, rplW, rplD, rplC, rpsJ, tuf, fusA, rpsG, rpsL, rpoC, rpoB, rplL, rplJ, rplA, rplK, nusG, secE, birA, rrf, msrQ, msrP, ilvC, ilvN, mrcB, deoC, sfsA, dksA, gluQRS, folK, panB, panC, pgi, pfkB, ptsP, cra, ampE, ampD, nadC, pilB, coaE, yacG, cheD, dnaB, xopAD, traD, mobH, clpB, pgeF, rluD, thiO, pilV, ispH, lspA, ileS, ribF, murJ, rpsT, proB, cgtA, rpmA, rplU, mnmH, selD, phnE, ggt, mmsB, tssI, recD, recB, recC, tyrS, erpA, argC, hemJ, coq7, speD, crp, trpC, trpD, estP, trpE, rpe, murU, rsmA, apaG, glpE, folB, plsY, tsaD, rpsU, dnaG, rpoD, msrA, pqqF, pqqA, pqqB, pqqC, pqqD, pqqE, bioD, bioC, bioF, bioB, choW, choV, fdhA, ilvA, rpiA, serA, potA, ssuB, ssuC, tauA, tauB, tauC, trmL, secB, grxC, gpmI, hisF, hisA, hisH, hisB, mutY, gabP, aguA, aguB, rfbB, rfbC, cysQ, nudE, yrfG, fdhD, tssB, tssC, tssE, tssF, tssG, tssH, tssJ, tssK, icmH, tagF, tssM, tssA, argE, gabT, gabD, desA, dibA, oscA, cysT, cysW, rep, argH, hemC, rsd, abc-f, prlC, trpB, trpA, betC, aroE, hemF, dprA, fmt, rsmB, trkA, glyQ, glyS, gmhB, drt2, gyrB, recF, dnaN, dnaA, rpmH, rnpA, yidD, yidC, mnmE, mnmG, rsmG, atpB, atpE, atpA, atpG, atpD, glmU, glmS, iolG, mmsA, cysC, hflK, hflC, cfaB, cls, zigA, pdxY, uvrD, hexR, oadA, aspA, purE, pstA, pstB, phoU, phoR, phoB, ubiA, acpP, hslO, rimK, gltP, rnk, cyaY, lptM, lysA, dapF, xerC, sutA, glnK, ligB, metK, tkt, epd, fba, dgcA, dgcB, gbcA, gbcB, mdtD, mutM, coaD, rsmD, ftsY, ftsE, ftsX, rpoH, mtgA, thiS, trmB, betI, betB, betA, lgt, cadR, hutG, hutI, hutH, hutU, betT, mgrA, ntrC, glnL, glnA, thiI, typA, radC, parA, metC, trbB, trbE, trbJ, trbL, trbF, trbG, recG, exbD, exbB, spoT, rpoZ, gmk, rph, pyrE, argB, dut, coaBC, rpmB, rpmG, dadA, alr, gcvT, gcvH, argA, gshA, ompR, algB, yihA, polA, znuA, znuC, znuB, katE, elbB, hemB, ppk1, ppx, rho, ubiD, glpT, ssrS, pepP, ubiH, tcyN, tcyL, tcyJ, epsC, hutC, pip, dtd, mdoH, tatC, tatB, hisI, ubiB, ubiE, phaC, phaZ, hslU, hslV, argS, rpmE, pilO, pilP, pilQ, aroK, aroB, gltB, hemE, fabG, mdcA, mdcE, mdcH, madL, madM, trhA, metF, ahcY, otnI, otnK, ltnD, alaC, ilvD, hemW, rdgB, metW, metX, proC, pyrR, ruvX, gshB, pilG, pilH, selO, mscK, putA, putP, yccS, dbpA, aceF, aceE, glnE, waaF, waaC, rfaP, msbA, hldE, waaA, thiC, cytX, cpdA, parE, parC, serB, asd, motA, motB, rsgA, orn, queG, tsaE, mutL, miaA, hfq, hflX, rnr, rlmB, rpsF, rpsR, rplI, azu, nadE, pncB, livM, dxs, yghU, ppa, eutC, mpl, ubiX, cueR, fecE, fecC, mksF, mksE, mksB, rimI, can, pcsA, gmd, ycaC, bcsQ, bcsA, bcsB, bcsZ, aroA, rfbG, rfbF, rfbA, rfbD, ychF, pth, ispE, lolB, hemA, prfA, prmC, murI, phrB, hemH, upp, mqo, rutF, rutD, rutC, rutB, rutA, rutR, pta, cysZ, trxB, folX, folE, folM, wecB, fecA, algG, algK, alg8, yaaA, moaC, moaD, moaE, rhlB, yejK, rlmF, lptF, lptG, gcvP, gap, edd, zwf, pgl, cyoA, cyoB, cyoD, cyoE, sodC, hpxZ, hmpA, hrpZ, sctI, sctJ, sctL, sctC, hrpT, sctU, sctT, sctS, s

Literature:

Visnovsky, Sandra B.; Marroni, Maria V.; Pushparajah, Shamini; Everett, Kerry R.; Taylor, Robert K.; Vinatzer, Boris A.; Pitman, Andrew R. (2019)Using multilocus sequence analysis to distinguish pathogenic from saprotrophic strains of Pseudomonas from stone fruit and kiwifruit.European Journal of Plant Pathology155(2)643-658. DOI: 10.1007/s10658-019-01799-8

Andersen, M. T.; Templeton, M. D.; Rees-George, J.; Vanneste, J. L.; Cornish, D. A.; Yu, J.; Cui, W.; Braggins, T. J.; Babu, K.; Mackay, J. F.; Rikkerink, E. H. A. (2018)Highly specific assays to detect isolates ofPseudomonas syringaepv.actinidiaebiovar 3 andPseudomonas syringaepv.actinidifoliorumdirectly from plant material.Plant Pathology67(5)1220-1230. DOI: 10.1111/ppa.12817

Visnovsky, Sandra B.; Panda, Preeti; Everett, Kerry R.; Lu, Ashley; Butler, Ruth C.; Taylor, Robert K.; Pitman, Andrew R. (2020)A PCR diagnostic assay for rapid detection of plant pathogenic pseudomonads.Plant Pathology69(7)1311-1330. DOI: 10.1111/ppa.13204

Jayaraman, Jay; Jones, William T.; Harvey, Dawn; Hemara, Lauren M.; McCann, Honour C.; Yoon, Minsoo; Warring, Suzanne L.; Fineran, Peter C.; Mesarich, Carl H.; Templeton, Matthew D. (2020)Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the Pseudomonas syringae species complex.Environmental Microbiology22(12)5356-5372. DOI: 10.1111/1462-2920.15250

Culture events

Isolated:

Date:

01 January 1967 (Verbatim: 01 Jan 1967)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

C. G. Panagopoulos (Reference number Al1)

Date:

01 June 1974 (Verbatim: 01 Jun 1974)

Transferred from:

Actioned by:

P. G. Psallidas

Duplicates

American Type Culture Collection: ATCC 33614

Direction:

Duplicate

Fera (UK): NCPPB 2607

Direction:

Duplicate

Belgian Coordinated Collections of Microorganisms: LMG 2123

Direction:

Duplicate

Assigned reference numbers

NZRCCNo:

NZRCC 10245

PDDCC:

PDDCC 3918

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice