Systematics Collections Data

ICMP 25020 – Dickeya ananatis Dobhal et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 25020
Culture type:
Bacterial Culture
Database record added:
13 July 2023
Database record updated:
25 July 2025
Components
Primary component
Active identification
Determined name:
Dickeya ananatis Dobhal et al.
Determiner:
Anne Alvarez, Mohammad Arif
Identification date:
2025 (Verbatim: 2025)
Preferred name:
Dickeya ananatis Dobhal et al.
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Enterobacterales
Family:
Pectobacteriaceae
Identification type:
Determination
Note:
Multi Locus Sequence Analysis, Next Generation Sequencing
Associations:
isolated from Ananas comosus (L.) Merr. 1917
Other identifications
Identification
Determined name:
Dickeya ananae in ed.
Determiner:
Identification date:
2023-07 (Verbatim: Jul 2023)
Preferred name:
Dickeya ananatis Dobhal et al.
Active:
no
Identification type:
Received as
Reference text:
Preprint name
Other components
Active identification
Determined name:
Ananas comosus (L.) Merr. 1917
Determiner:
Identification date:
Preferred name:
Ananas comosus (L.) Merr. 1917
Division:
Tracheophyta
Class:
Liliopsida
Order:
Poales
Family:
Bromeliaceae
Vernacular name:
Pineapple
Identification type:
Determination
Part affected:
Leaves
Substrate:
Crystal Violet Pectate (CVP) Medium
Collection events
Primary collection event
Collection event type:
Unknown
Standard locality
Location:
Oahu, Hawaii
Georeferences:
Latitude and Longitude (WGS84):  21.4390774159404  -157.99958491448194   (WGS84 21.439077 -157.999585)
Verbatim locality:
Oahu, Hawaii
Verbatim collector:
Anne Alvarez
Standardised collector:
Anne M. Alvarez
Verbatim date:
08 Jan 2007
Start date:
2007-01-08
Country:
United States
Culture flags
Price Category:
Category 2
MPI:
Restricted Culture
Culture notes
Pathogenic to:
Pineapple
Growth Conditions:
Grows optimally at 28 degrees C on Nutrient Agar supplement with 0.4% glucose
External links
GenBank:

[TRUNCATED] CP040816 - nifJ, nifH, nifD, nifK, nifT, nifE, nifN, nifU, nifS, nifV, nifM, nifL, nifA, nifB, abgT, queG, tsaE, amiB, mutL, miaA, hfq, hflX, hflK, hflC, mpl, ruvX, gshB, rsmE, endA, metK, speA, tsgA, tkt, fbaA, mscS, rpiA, serA, ettA, sltY, trpR, yjjX, gpmB, robA, creA, arcA, thrA, thrB, thrC, yaaA, tal, satP, dnaK, dnaJ, nhaA, nhaR, rpsT, ribF, ileS, fkpB, ispH, rihC, dapB, carA, carB, folA, apaH, apaG, rsmA, pdxA, surA, lptD, djlA, rluA, rapA, ilvN, ilvB, ivbL, thiQ, thiP, tnaA, tnaC, leuD, leuC, leuB, leuA, leuL, ilvI, cra, mraZ, rsmH, ftsL, murE, murF, mraY, murD, ftsW, murG, murC, ftsQ, ftsA, ftsZ, lpxC, secM, secA, mutT, yacG, zapD, coaE, hofC, gspE, ppdD, nadC, ampD, ampE, pdhR, aceE, aceF, lpdA, acnB, ugpC, vgrG, uvrA, cas1f, cas3f, csy1, csy2, csy3, cas6f, alr, dnaB, pspG, dusA, lysA, galR, lpxO, lplT, hemW, codA, nsrR, rlmB, bsmA, rpsF, priB, rpsR, rplI, ytfE, cysQ, msrA, pheS, plsY, folB, glnE, hldE, ligA, garD, gudD, garL, barA, rlmD, relA, mazG, pyrG, queE, queD, cysJ, cysI, cobA, cysD, cysN, cysC, ftsB, ispD, ispF, truD, nlpD, rpoS, proS, tsaA, rcsF, metI, metN, gmhB, rrf, pssA, trxC, emrB, emrA, mprA, ygaH, proX, proW, proV, atzF, hpxA, puuE, hpxZ, hpxX, hpxK, mtnC, mtnA, lpcA, dinB, pepD, frsA, proB, proA, yafN, yehT, eutR, yjfF, mgtS, cybB, pncC, recA, recX, alaS, csrA, yqaB, luxS, rpsP, rimM, trmD, rplS, tyrA, pheA, raiA, bamD, rluD, pgeF, clpB, mltD, gloB, rnhA, dnaQ, speD, speE, panD, panC, panB, folK, pcnB, gluQRS, dksA, sfsA, thpR, hrpB, mrcB, hemL, clcA, erpA, btuF, mtnN, degP, cysT, cysW, gltX, grcA, srmB, nadB, rpoE, rseA, rseB, rseC, lepA, lepB, recO, pdxJ, pdeH, murQ, tadA, mltF, purL, qseG, glrR, glnB, hmpA, suhB, trmJ, iscR, iscU, iscA, hscB, hscA, fdx, iscX, pepB, sseB, sseA, trmG/rlmN, pilW, rodZ, ispG, hisS, bamB, der, xseA, guaB, guaA, thiM, thiD, psiE, baeR, baeS, mdtC, ompA, sulA, yccS, helD, hspQ, tusE, yccA, ppx, ppk1, pstA, pstB, purK, purE, ppiB, cysS, ybcJ, folD, hutG, hutC, hutH, uxaC, gspC, gspD, gspF, gspG, gspH, gspI, gspJ, gspL, ypdK, dhbA, entE, fepG, fepD, entS, fepB, mlaA, mqo, fadL, fadI, fadJ, sixA, smrB, prmB, aroC, mepA, mnmC, fabB, tctD, pdxB, truA, accD, folC, dedD, cvpA, purF, argT, hisP, yfcG, yfcD, lrhA, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, hybO, hybA, hybB, hybC, hybE, hypA, hypB, hybG, hypD, hypE, hypF, fdnG, fdxH, fdoI, fdhE, ntrB, nirD, ggt, tssI, cycA, uvrY, uvrC, pgsA, dsrB, flhD, flhC, motA, motB, cheA, cheW, cheR, cheY, cheZ, flhB, flhA, flgM, flgA, flgB, flgC, flgD, flgG, flgH, flgJ, flgK, flgL, fliR, fliQ, fliP, fliO, fliN, fliM, fliL, fliJ, fliI, fliH, fliG, fliF, fliE, fliT, fliS, fliD, fliZ, phoH, fabA, matP, mdoH, mdtG, lpxL, bssS, dinI, pyrC, rluC, yceD, rpmF, plsX, fabD, fabG, acpP, fabF, pabC, mltG, holB, ptsG, hinT, lpoB, nagZ, yegD, lolC, lolD, lolE, nagK, cobB, btuC, btuD, ldtD, asnS, pncB, pepN, ssuB, ssuC, ssuD, ssuE, pyrD, rlmKL, pqiA, pqiB, pqiC, ppsA, rprA, ydiK, pykF, bglG, bglF, ascB, purR, ynhF, gloA, slyA, anmK, pdxH, tyrS, pdxY, gstA, ribA, pgpB, lapB, pyrF, yciH, osmB, araD, kdgT, fabI, sapF, sapD, sapC, sapB, sapA, pspF, pspA, pspB, pspC, tyrR, mpaA, zntB, ttcA, hrpA, asr, rstB, rstA, dauA, chaA, guaD, smrA, rsmF, proQ, narL, narX, blaCAR, narH, narJ, narI, yiaY, pptA, hisN, sbmA, feoB, pepT, phoQ, phoP, purB, hflD, mnmA, rluE, htpX, kdgR, thrS, infC, rpmI, rplT, pheM, pheT, ihfA, nadE, osmE, kdgM, kduD, kduI, cspE, rlmA, mntP, manX, pabB, tsaB, fadD, minE, minD, minC, dsbB, fadR, recC, recB, recD, dbpA, fhuA, ychF, ychH, ispE, lolB, hemA, prfA, prmC, kdsA, pntA, pntB, uspE, fnr, ydfG, bioD, fumC, manA, araC, araH, araA, ydgT, rsxA, rsxB, rsxC, rsxD, rsxG, cysB, topA, sohB, cobO, rluB, trpD, trpCF, trpB, trpA, ompW, yciA, tonB, cls, oppC, oppB, oppA, adhE, galU, rssB, rssA, purU, xthA, sppA, ansA, pncA, msrB, gapA, ftnA, copD, copC, purT, zwf, pyk, msbB, mepM, znuA, znuC, znuB, ruvB, ruvA, ruvC, nudB, aspS, cmoA, cmoB, argS, murJ, rimJ, mdtH, grxB, cueO, mukB, mukE, mukF, cmoM, elyC, kdsB, lpxK, msbA, sbcB, citG, citX, citF, citE, citD, citC, hisG, hisD, hisC, hisB, hisH, hisA, hisF, ihfB, rpsA, aroA, serC, focA, pflB, yidD, pflA, dmsD, serS, lolA, lrp, trxB, cydD, cydC, infA, clpA, clpS, cspD, hcp, artP, artQ, artM, rlmC, potI, potH, potG, potF, rimK, nfsA, grxA, deoR, rimO, sanA, folE, fghA, fruA, fruK, yeiP, mepS, yejF, rsuA, rplY, yejK, arsC, pxpA, ompX, rhtA, dps, glnH, glnP, glnQ, ybiB, dinG, bglX, cyaB, dusC, rhlE, hlyD, clsB, moaE, moaD, moaC, moaB, moaA, cydB, yvcK, uvrB, bioC, bioF, bioB, bioA, cdd, moeA, moeB, mtfA, nrfD, mdcH, mdcE, mdcC, mdcA, dsbG, fdnI, phnE, phnD, phnC, phnP, phnN, phnM, phnL, phnK, phnH, phnG, phnF, ygjG, patD, yghU, gltP, cbl, hyfB, hyfE, hyfH, nuoB, hycH, hycI, hypT, virB9, virB11, nikA, ftsI, katG, arsD, proP, efeB, tssM, tssA, tagO, tssH, tssK, tssJ, tagH, tssG, tssF, tssE, tssC, tssB, gndA, cpsG, rfbD, rfbC, rfbA, rffG, wcaJ, wzc, asmA, apbC, metG, modC, modB, modA, modE, modF, galE, galT, galK, galM, gpmA, aroG, nadA, cpoB, pal, tolB, tolA, tolR, tolQ

OR271567 - 16S ribosomal RNA

Literature:

Dobhal, Shefali; Hugouvieux-Cotte-Pattat, Nicole; Arizala, Dario; Sari, Gamze Boluk; Chuang, Shu-Cheng; Alvarez, Anne M.; Arif, Mohammad (2025) Dickeya ananatis sp. nov., pectinolytic bacterium isolated from pineapple (Ananas comosus). International Journal of Systematic and Evolutionary Microbiology 75(6). DOI: 10.1099/ijsem.0.006822

Culture events
Isolated:
Actioned by:
Anne M. AlvarezMohammad Arif (Reference number A5410)
Date:
08 January 2007 (Verbatim: 08 Jan 2007)
Deposited:
Actioned by:
Anne M. AlvarezMohammad Arif
Date:
10 July 2023 (Verbatim: 10 Jul 2023)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice