Specimen Details

ICMP 15197 – Xylella fastidiosa subsp. fastidiosa (Wells et al. 1987) Schaad et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 15197

Type status:

Type strain

Culture type:

Bacterial Culture

Database record added:

30 October 2003

Database record updated:

28 February 2023

Components

Primary component

Active identification

Determined name:

Xylella fastidiosa subsp. fastidiosa

Determiner:

Identification date:

Preferred name:

Xylella fastidiosa subsp. fastidiosa (Wells et al. 1987) Schaad et al.

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Lysobacterales

Family:

Lysobacteraceae

Identification type:

Determination

Associations:

isolated from Vitis vinifera

Other identifications

Identification

Determined name:

Xylella fastidiosa subsp. piercei

Determiner:

Identification date:

Preferred name:

Xylella fastidiosa Wells et al.

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Vitis vinifera

Determiner:

Identification date:

Preferred name:

Vitis vinifera L.

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Vitales

Family:

Vitaceae

Identification type:

Determination

Part affected:

leaves

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Florida

Georeferences:

Latitude and Longitude (WGS84): 28.1 -81.6

Verbatim locality:

Florida

Verbatim collector:

B.C. Raju

Standardised collector:

B. C. Raju

Verbatim date:

before 1987

Start date:

1987

Country:

United States

Native lands:

Seminole

Tocobaga

Georeferences:

Latitude and Longitude (WGS84): 28.1 -81.6

Culture flags

MPI:

Restricted Culture

Price Category:

Category 3

MPI:

Unwanted Organism

Culture notes

Growth Conditions:

PD2 agar or BYCE + phytagel 25 C, 10-20 days. Use phytagel instead of agar as Xylella grows very poorly on agar

External links

GenBank:

PRJNA258391 - Xylella fastidiosa strain:ATCC 35879 Genome sequencing and assembly

JQAP00000000 - genomic DNA

AF272834 - contains 16S ribosomal RNA, 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA, tRNA-Ala, tRNA-Ile

CP118539 - dnaA, dnaN, recF, gyrB, exbB, hemF, pilV, pyrF, mscL, rlmJ, mfd, aroQ, accB, accC, uvrD, hmpA, bioB, ubiA, rrf, mutM, ffh, hflX, hfq, miaA, folP, ftsH, yhbY, ilvD, waaA, rpsP, rimM, trmD, rplS, map, dapD, dapE, asnB, lexA, recA, alaS, csrA, lptF, lptG, glmS, speE, speA, argS, radC, coaBC, dut, pyrE, tyrS, fabG, gcvH, gcvT, mazG, cysQ, nudE, bioA, queD, dnaE, rpe, trpE, trpD, trpC, tgt, yajC, secD, secF, pcnB, folK, panB, panC, pgi, rimP, nusA, infB, rbfA, truB, rpsO, pnp, rfbB, rfbA, rfbC, rfbD, mpl, acnA, acnB, tpiA, secG, nuoE, nuoF, nuoG, nuoH, nuoI, nuoK, nuoL, nuoN, phbB, htpG, rsmD, coaD, ggt, yidD, dksA, cysS, argC, argH, proB, tadA, mntR, tesB, ffs, plsB, ahcY, lpxB, lpxA, fabZ, lpxD, bamA, rseP, dxr, uppS, frr, rnpB, pyrH, edd, pgl, glk, zwf, ugpC, sdhC, sdhD, sdhA, lolD, msbA, lpxK, wrbA, pncB, polA, carA, carB, greA, recJ, prfB, lysS, murL, murD, metF, rng, tldD, yjgA, pmbA, glmU, atpD, atpG, atpA, atpE, atpB, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplN, rplX, rplE, rpsN, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY, rpsM, rpsK, rpsD, rpoA, rplQ, tig, clpP, clpX, lon, rpmB, rpmG, cls, typA, hrpB, prpB, acnD, prpF, orn, ppsA, lipA, lipB, parE, kdsA, eno, ftsB, ispD, ispF, mreC, mreD, mrdA, rodA, queA, minE, minD, minC, hemE, aroB, pdxH, cysT, cysW, rpoD, parC, bioH, bioF, cyoE, asd, prmB, aroC, truA, trpB, trpA, radA, recQ, gcvP, cyoD, cyoC, cyoB, cyoA, gloA, ptsP, rapZ, hprK, raiA, lptB, lptA, lptC, murA, purL, xerD, yihA, hflD, mnmA, clpS, clpA, infA, aat, trxB, lolA, crcB, gluP, nagA, accD, glmM, sufD, sufC, sufB, dapF, xerC, hslV, hslU, ubiE, cysI, cysD, cysN, rpoZ, gmk, rph, rdgB, hemW, pip, prmC, gspE, gspG, gspM, gspD, ahpC, ahpF, tsaB, rpsI, rplM, coq7, speD, crp, lpdA, sucB, purB, mnmG, lpxO, bioC, folE2, sbcB, rpiA, ssrS, sufT, fis, ribA, rnr, rlmB, folE, ampE, yccS, purD, purH, glyQ, glyS, gshB, purF, folC, dcp, msrA, tkt, rsmG, xth, nadC, nadA, trpR, ftsY, mutY, ruvC, ruvA, ruvB, ybgC, tolQ, tolR, tolA, tolB, pal, ybgF, queE, gpmA, nfi, thiC, queC, aspS, terL, bet, ntrC, amt, glnA, ubiB, purU, zapE, ilvC, ilvG, rpmF, recR, dnaX, secB, birA, mutS, mtgA, mprF, hemC, mdoH, dacB, fucP, ybaL, pstS, pstC, pstA, pstB, phoU, rnt, rsmA, apaG, dnaQ, rnhA, gloB, ppa, leuS, lptE, holA, nadD, rsfS, mltB, prmA, yeiP, serA, mtnC, hisIE, hisF, hisA, hisH, hisB, hisC, hisD, hisG, hisS, thrC, thrA, ruvX, katG, pbpC, rpoE, lepA, lepB, rnc, era, recO, dxs, acs, glpD, glpK, metE, serS, uvrC, pgsA, hemB, hemL, apbC, kdsB, aroA, pheA, serC, lgt, dnaJ, dnaK, grpE, hrcA, recN, fur, smpB, nagZ, rlmD, leuB, leuD, leuC, queF, grxD, ispH, lspA, ileS, murJ, rpsT, obgE, rpmA, rplU, uvrA, guaA, guaB, folD, galU, lapB, rpsA, cmk, ykgO, scpB, ccmA, ccmB, ccmC, ccmE, efp, epmB, bioD, mltG, fabF, acpP, fabD, aceE, tilS, nth, aroE, thiD, groL, gmd, hda, purM, purN, tmk, fabA, ttcA, hemH, tatA, tatB, tatC, azu, rsgA, rsmI, metG, rnfB, ppnN, moeB, der, bamB, pilW, rlmN, ndk, gap, hflK, pilH, pssA, rimI, bglX, folB, tsaD, rpsU, dnaG, recD, recC, mlaD, erpA, bfr, metK, dusA, clpB, thiE, pilM, recG, rlmH, uvrB, dapA, thiL, nusB, ribH, ribB, ribD, nrdR, ettA, mqo, pgeF, rluD, rsmB, fmt, def, dprA, petA, miaB, ybeY, mrcB, can, aceF, surE, alr, msrB, pdxA, lptD, ubiH, cysG, cysK, pyk, gltX, secA, lpxC, ftsZ, ftsA, murC, murG, ftsW, mraY, ftsL, rsmH, trmB, thiS, blh, bigR, dcd, mutL, tsaE, xseA, rnd, rlmM, pheT, pheS, rplT, rpmI, infC, thrS, rimK, coaE, pilB, sucC, sucD, gyrA, mtnA, epmA, ligA, zipA, smc, rplI, rpsR, rpsF, asnS, murB, ispG, tsf, rpsB, lpxH, ppx, ppk1, phoR, phoB, grxC, htpX, tuf, fusA, rpsG, rpsL, rpoC, rpoB, rplL, rplJ, rplA, rplK, nusG, secE, ychF, pth, ispE, lolB, hemA, prfA, rlmKL, purE, rep, sppA, rpoH, ung, ftsX, rhlB, trxA, rho, gltB, proC, ssrA, mnmE, yidC, rnpA, rpmH

CP118540 - trbL, trbJ, trbG, trbB, kleE, tnpA, traJ, traF

Literature:

Wells, J. M.; Raju, B. C.; Hung, H.-Y.; Weisburg, W. G.; Mandelco-Paul, L.; Brenner, D. J. (1987)Xylella fastidiosa gen. nov., sp. nov: Gram-Negative, Xylem-Limited, Fastidious Plant Bacteria Related to Xanthomonas spp.International Journal of Systematic Bacteriology37(2)136-143. DOI: 10.1099/00207713-37-2-136

Schaad, Norman W.; Postnikova, Elena; Lacy, George; Fatmi, M'Barek; Chang, Chung-Jan (2004)Xylella fastidiosa subspecies: X. fastidiosa subsp piercei, subsp. nov., X. fastidiosa subsp. multiplex subsp. nov., and X. fastidiosa subsp. pauca subsp. nov.Systematic and Applied Microbiology27(3)290-300. DOI: 10.1078/0723-2020-00263

Jacques, Marie-Agnès; Denancé, Nicolas; Legendre, Bruno; Morel, Emmanuelle; Briand, Martial; Mississipi, Stelly; Durand, Karine; Olivier, Valérie; Portier, Perrine; Poliakoff, Françoise; Crouzillat, Dominique (2016)New Coffee Plant-Infecting Xylella fastidiosa Variants Derived via Homologous Recombination.Applied and Environmental Microbiology82(5)1556-1568. DOI: 10.1128/AEM.03299-15

Culture events

Deposited:

Actioned by:

Norman W. Schaad (Reference number ICPB 50025)

Date:

07 January 2004 (Verbatim: 07 Jan 2004)

Transferred via:

Actioned by:

J. M. Wells (Reference number 2686)

Transferred from:

Actioned by:

B. C. Raju (Reference number PCE-RR)

Duplicates

American Type Culture Collection: ATCC 35879

Direction:

Duplicate

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice