Specimen Details

ICMP 12944 – Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B.S. Weir

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 12944

Type status:

Holotype

Culture type:

Fungal Culture

Database record added:

25 January 2002

Database record updated:

23 April 2020

Components

Primary component

Active identification

Determined name:

Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir

Determiner:

B.Weir

Identification date:

2012 (Verbatim: 2012)

Preferred name:

Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B.S. Weir

Division:

Ascomycota

Class:

Sordariomycetes

Order:

Glomerellales

Family:

Glomerellaceae

Identification type:

Determination

Type status:

Holotype

Associations:

isolated from Capsicum annuum L.

Other identifications

Identification

Determined name:

Glomerella cingulata (Stoneman) Spauld. & H. Schrenk

Determiner:

Identification date:

Preferred name:

Colletotrichum gloeosporioides (Penz.) Penz. & Sacc.

Active:

Identification type:

Determination

Identification

Determined name:

Glomerella cingulata

Determiner:

Identification date:

Preferred name:

Colletotrichum gloeosporioides (Penz.) Penz. & Sacc.

Active:

Identification type:

Received as

Identification

Determined name:

Colletotrichum "gloeosporioides Group E" P.R. Johnst.

Determiner:

P.R. Johnston

Identification date:

1997 (Verbatim: 1997)

Preferred name:

Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B.S. Weir

Active:

Identification type:

Determination

Other components

Active identification

Determined name:

Capsicum annuum L.

Determiner:

Identification date:

Preferred name:

Capsicum annuum L.

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Solanales

Family:

Solanaceae

Vernacular name:

Sweet pepper

Identification type:

Determination

Part affected:

Fruit rot

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Gisborne

Georeferences:

Latitude and Longitude (WGS84): -38.6625 178.017778

Verbatim locality:

Gisborne

Verbatim collector:

P.R. Johnston

Standardised collector:

Peter R. Johnston

Verbatim date:

Mar 1990

Start date:

1990-03

Country:

New Zealand

New Zealand Area Codes:

Gisborne

Culture flags

Price Category:

Category 1

Culture notes

Other Details:

C. gloeosporioides group E (Johnston and Jones)

Characterised as:

Identified by sequencing and morphology
B. Weir

External links

GenBank:

JQ005228 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

U79683 - 28S ribosomal RNA

JQ005489 - HIS3

JQ005576 - ACT

Note: as CBS 128505

JQ005749 - CAL

Note: as CBS 128505

NR_120031 - 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

JQ005315 - GAPDH

Note: as CBS 128505

JQ005662 - TUB2

Note: as CBS 128505

JQ005402 - CHS1

Note: as CBS 128505

MH864998 - genomic DNA

Note: as CBS 128505

Literature:

Vu, D.; Groenewald, M.; de Vries, M.; Gehrmann, T.; Stielow, B.; Eberhardt, U.; Al-Hatmi, A.; Groenewald, J.Z.; Cardinali, G.; Houbraken, J.; Boekhout, T.; Crous, P.W.; Robert, V.; Verkley, G.J.M. (2019)Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.Studies in Mycology92(1)135-154. DOI: 10.1016/j.simyco.2018.05.001

Weir, B.S.; Johnston, P.R.; Damm, U. (2012)The Colletotrichum gloeosporioides species complex.Studies in Mycology73115-180. DOI: 10.3114/sim0011

Culture links

Relates To:

ICMP 10958

Culture events

Isolated:

Date:

01 March 1990 (Verbatim: 01 Mar 1990)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

Peter R. Johnston (Reference number C1145-2)

Date:

01 August 1996 (Verbatim: 01 Aug 1996)

Duplicates

Westerdijk Fungal Biodiversity Institute: CBS 128505

Direction:

Duplicate

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice