Specimen Details

ICMP 9525 – Rathayibacter toxicus (Riley & Ophel 1992) Sasaki et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 9525

Type status:

Type strain

Culture type:

Bacterial Culture

Database record added:

25 January 2002

Database record updated:

21 July 2023

Components

Primary component

Active identification

Determined name:

Rathayibacter toxicus (Riley & Ophel 1992) Sasaki et al.

Determiner:

Identification date:

Preferred name:

Rathayibacter toxicus (Riley & Ophel 1992) Sasaki et al.

Division:

Actinomycetota

Class:

Actinobacteria

Order:

Actinomycetales

Family:

Microbacteriaceae

Identification type:

Determination

Type status:

Type strain

Associations:

isolated from Lolium rigidum Gaudin

Other identifications

Identification

Determined name:

Clavibacter toxicus Riley & Ophel 1992

Determiner:

Identification date:

Preferred name:

Rathayibacter toxicus (Riley & Ophel 1992) Sasaki et al.

Active:

Identification type:

Determination

Type status:

Type strain

Identification

Determined name:

Clavibacter toxicus

Determiner:

Identification date:

Preferred name:

Rathayibacter toxicus (Riley & Ophel 1992) Sasaki et al.

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Lolium rigidum Gaudin

Determiner:

Identification date:

Preferred name:

Lolium rigidum Gaudin

Division:

Tracheophyta

Class:

Liliopsida

Order:

Poales

Family:

Gramineae

Vernacular name:

Wimmera ryegrass

Identification type:

Determination

Part affected:

seed gall

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Murray Bridge, SA

Georeferences:

Latitude and Longitude (WGS84): -35.117 139.267

Verbatim locality:

Murray Bridge, SA

Verbatim collector:

Verbatim date:

Country:

Australia

Culture flags

MPI:

Restricted Culture

Price Category:

Category 2

Culture notes

Other Details:

causes annual ryegrass toxicity

External links

GenBank:

NR_037136 - 16S ribosomal RNA

AUDF00000000 - genomic DNA

PRJNA188887 - Rathayibacter toxicus DSM 7488

CP061742 - dnaA, dnaN, gnd, recF, gyrB, gyrA, pknB, mtnN, nucS, rfbD, nadE, lpdA, xth, cas2e, cas1e, cas6e, cas5e, cas7e, casB, casA, purL, purQ, purS, rrf, purD, purF, recQ, tilS, hpt, ftsH, folP, folB, folK, lysS, cls, radA, dgt, upp, aspS, ccsB, menD, ubiE, secE, nusG, rplK, rplA, rplJ, rplL, nrdH, nrdI, nrdE, nrdF, xylB, ffs, pta, recR, acs, topA, ribA, ribD, aroQ, glpK, trpS, sdhC, maf, purE, rfbC, rfbA, manA, galE, raiA, secA, bcp, rsgA, aroA, greA, mca, fbaA, glpX, rmuC, ychF, ppk2, gcvT, gcvH, gcvP, typA, efeB, dapC, dapD, rho, prfA, prmC, rfbB, atpB, atpE, atpD, yaaA, gabT, ispG, nusA, infB, rbfA, truB, thiE, thiM, leuC, leuD, murA, thiL, rsmD, coaD, cofC, rpsT, lepA, pdxS, pdxT, ruvC, ruvA, ruvB, yajC, secD, secF, rpsD, alaS, ruvX, mltG, aroC, efp, nusB, pyrR, carA, carB, pyrF, gmk, coaBC, rpe, hisF, hisI, trpC, trpB, gltB, pyk, polA, rpsA, uvrB, uvrA, uvrC, rapZ, whiA, gap, secG, pgl, tal, sufB, sufD, sufC, fabG, serB, glgA, glgX, treY, treZ, proB, tatA, tatC, lnt, modA, modB, zapE, acnA, dut, sucB, glnA, panB, rnpB, rsfS, obgE, rpmA, rplU, ndk, valS, clpX, pepN, ettA, msrA, aepY, solA, orn, dinB, gatB, gatA, gatC, ligA, mnmA, glgB, frr, rpsB, dprA, lepB, rplS, map, trmD, rimM, rpsP, ffh, lipB, lipA, ftsY, smc, moaA, moaC, lysA, mutM, rpmF, cofD, aceE, def, dusB, recO, leuA, era, ybeY, dnaJ, hrcA, dhaM, dhaL, trpD, ctaD, coxB, nrdR, hisD, dnaE, lspA, sepF, ftsZ, murC, ftsW, rsmH, mraZ, zwf, ald, ligD, argG, der, cmk, scpB, xerD, recN, argH, argF, argB, argJ, pheS, rplT, rpmI, priA, hisH, hisB, lexA, metE, hflX, miaA, miaB, recA, pgsA, dapA, rpsO, rfaE2, ilvC, ilvN, ilvD, otsB, ssrA, smpB, ftsE, prfB, rph, nudC, eno, mfd, gndA, glmU, rsmA, rsmI, hrpA, galU, fgd, cofG, groL, msrB, ugpC, rlmB, phoU, mshD, pstS, pstC, pstA, sigK, galT, galK, purU, purH, sucD, sucC, guaA, guaB, rarD, groES, tsaD, rimI, tsaB, tsaE, alr, glmS, rpsI, rplM, truA, rplQ, rpsK, rpsM, rpmJ, infA, ptsP, secY, rplO, rpmD, rpsE, rplR, rplF, rpsH, rplE, rplX, rplN, rpsQ, rplP, rpsC, rplV, rpsS, rplB, rplW, rplD, rplC, rpsJ, tuf, fusA, rpsG, rpoB, serS, pheA, hemL, hemB, hemC, hemE, mptB, dnaK, crtI, idi, deoC, vanA, vanX, rpsN, rpmG, rpmB, purB, crcB, pabB, dnaB, rplI, rpsF, trxB, trxA, rsmG, yidC, yidD, rnpA, rpmH

Literature:

Riley, I. T.; Ophel, K. M. (1992)Clavibacter toxicus sp. nov., the Bacterium Responsible for Annual Ryegrass Toxicity in Australia.International Journal of Systematic Bacteriology42(1)64-68. DOI: 10.1099/00207713-42-1-64

Sasaki, J.; Chijimatsu, M.; Suzuki, K.-i. (1998)Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov.International Journal of Systematic Bacteriology48(2)403-410. DOI: 10.1099/00207713-48-2-403

Riley, I. T. (1987)Serological Relationships between Strains of Coryneform Bacteria Responsible for Annual Ryegrass Toxicity and Other Plant-Pathogenic Corynebacteria.International Journal of Systematic Bacteriology37(2)153-159. DOI: 10.1099/00207713-37-2-153

Culture events

Isolated:

Date:

01 January 1983 (Verbatim: 01 Jan 1983)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

I. T. Riley (Reference number CS14)

Date:

01 April 1988 (Verbatim: 01 Apr 1988)

Duplicates

Japan Collection of Microorganisms: JCM 9669

Direction:

Duplicate

Fera (UK): NCPPB 3552

Direction:

Duplicate

American Type Culture Collection: ATCC 49908

Direction:

Duplicate

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice