Specimen Details

ICMP 63 – Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 63

Type status:

Type strain

Culture type:

Bacterial Culture

Loan status:

Active

Database record added:

25 January 2002

Database record updated:

28 October 2023

Components

Primary component

Active identification

Determined name:

Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al. 1995

Determiner:

J.M. Young

Identification date:

2007-01-03 (Verbatim: 3 Jan 2007)

Preferred name:

Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al.

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Lysobacterales

Family:

Lysobacteraceae

Identification type:

Determination

Type status:

Type strain

Associations:

isolated from Lycopersicon esculentum Mill.

Other identifications

Identification

Determined name:

Xanthomonas vesicatoria

Determiner:

Identification date:

Preferred name:

Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al.

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Lycopersicon esculentum Mill.

Determiner:

Identification date:

Preferred name:

Solanum lycopersicum L.

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Solanales

Family:

Solanaceae

Vernacular name:

tomato

Identification type:

Determination

Part affected:

leaf spot

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Auckland

Georeferences:

Latitude and Longitude (WGS84): -36.840556 174.74

Verbatim locality:

Auckland

Verbatim collector:

D.W. Dye

Standardised collector:

Douglas W. Dye

Verbatim date:

1955

Start date:

1955

Country:

New Zealand

New Zealand Area Codes:

Auckland

Native lands:

Ngāi Tai ki Tāmaki

Ngāti Maru (Hauraki)

Te Ākitai Waiohua

Te Kawerau a Maki

Georeferences:

Latitude and Longitude (WGS84): -36.840556 174.74

Culture flags

Price Category:

Category 1

Culture notes

Pathogenic to:

tomato

Other Details:

Copper resistant

External links

GenBank:

AEQV00000000 - genomic DNA

CP018727 - acetyltransferase, ATPase, autotransporter, conjugal transfer protein, conjugal transfer protein TraG, conjugal transfer protein TrbC, conjugal transfer protein TrbF, conjugal transfer protein TrbI, DNA topoisomerase III, hypothetical protein, KfrA protein, peptidase C55, P-type conjugative transfer protein TrbG, P-type conjugative transfer protein TrbL, transcriptional regulator, transglycosylase, transposase, type II/IV secretion system family protein, type III secretion system effector protein, type IV secretion system protein VirB4

CP018726 - arsenate reductase (glutaredoxin), arsenical efflux pump membrane protein ArsB, arsenical resistance protein ArsH, ArsR family transcriptional regulator, ATP-dependent DNA helicase DinG, ATP-dependent endonuclease, cation transporter, cobalt ABC transporter substrate-binding protein, copper amine oxidase, copper oxidase, copper resistance protein, copper resistance protein CopB, copper-translocating P-type ATPase, cytochrome c family protein, DDE transposase, DUF305 domain-containing protein, DUF4440 domain-containing protein, efflux transporter periplasmic adaptor subunit, ferredoxin, formimidoylglutamase, histidine kinase, hypothetical protein, integrase, MerR family transcriptional regulator, phosphoadenosine phosphosulfate reductase, single-stranded DNA-binding protein, TonB-dependent receptor, transcriptional regulator, transporter, transposase, tRNA-Ile, type IV conjugative transfer system protein TraL, type-IV secretion system protein TraC

CP018725 - motC, fliA, flgD, sirA, ugpC, potG, nusA, rimO, gpmA, aroK, fadE, relA, ssrS, hppA, rrf, actP, tatA, lldD, trpC, treA, glyA, rnpB, nusG, ffs, fabG, dnaE2, obgE, asnB, emrB, ssrA, aspA, hflB

HM181928 - genomic DNA

PRJNA344031 - copper-resistant pathogens and commensal xanthomonads Genome sequencing and assembly

PRJNA60019 - Xanthomonas vesicatoria ATCC 35937 genome sequencing project

KX437707 - gyrB

KX437678 - hrpB

PP691115

Literature:

Vicente, J. G.; Conway, J.; Roberts, S. J.; Taylor, J. D. (2001)Identification and Origin of Xanthomonas campestris pv. campestris Races and Related Pathovars.Phytopathology®91(5)492-499. DOI: 10.1094/PHYTO.2001.91.5.492

Potnis, Neha; Krasileva, Ksenia; Chow, Virginia; Almeida, Nalvo F; Patil, Prabhu B; Ryan, Robert P; Sharlach, Molly; Behlau, Franklin; Dow, J Max; Momol, MT; White, Frank F; Preston, James F; Vinatzer, Boris A; Koebnik, Ralf; Setubal, João C; Norman, David J; Staskawicz, Brian J; Jones, Jeffrey B (2011)Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.BMC Genomics12(1). DOI: 10.1186/1471-2164-12-146

Richard, D.; Ravigné, V.; Rieux, A.; Facon, B.; Boyer, C.; Boyer, K.; Grygiel, P.; Javegny, S.; Terville, M.; Canteros, B. I.; Robène, I.; Vernière, C.; Chabirand, A.; Pruvost, O.; Lefeuvre, P. (2017)Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements.Molecular Ecology26(7)2131-2149. DOI: 10.1111/mec.14007

Osdaghi, E.; Taghavi, S. M.; Hamzehzarghani, H.; Fazliarab, A.; Lamichhane, J. R. (2017)Monitoring the occurrence of tomato bacterial spot and range of the causal agentXanthomonas perforansin Iran.Plant Pathology66(6)990-1002. DOI: 10.1111/ppa.12642

Culture events

Isolated:

Date:

01 January 1955 (Verbatim: 01 Jan 1955)

Deposited:

Actioned by:

Douglas W. Dye (Reference number X1)

Date:

01 July 1962 (Verbatim: July 1962)

Duplicates

American Type Culture Collection: ATCC 35937

Direction:

Duplicate

Belgian Coordinated Collections of Microorganisms: LMG 911

Direction:

Duplicate

Fera (UK): NCPPB 422

Direction:

Duplicate

Assigned reference numbers

NZRCCNo:

NZRCC 10461

PDDCC:

PDDCC 63

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice