Systematics Collections Data

ICMP 4013 – Xanthomonas campestris pv. campestris (Pammel 1895) Dowson

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 4013
Culture type:
Bacterial Culture
Database record added:
25 January 2002
Database record updated:
26 May 2021
Components
Primary component
Active identification
Determined name:
Xanthomonas campestris pv. campestris (Pammel 1895) Dowson 1939
Determiner:
Identification date:
Preferred name:
Xanthomonas campestris pv. campestris (Pammel 1895) Dowson
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Lysobacterales
Family:
Lysobacteraceae
Identification type:
Determination
Associations:
isolated from Brassica oleracea L. var. capitata L.
Other identifications
Identification
Determined name:
Xanthomonas campestris pv. campestris
Determiner:
Identification date:
Preferred name:
Xanthomonas campestris pv. campestris (Pammel 1895) Dowson
Active:
no
Identification type:
Received as
Other components
Active identification
Determined name:
Brassica oleracea L. var. capitata L.
Determiner:
Identification date:
Preferred name:
Brassica oleracea L.
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Brassicales
Family:
Cruciferae
Vernacular name:
cabbage
Identification type:
Determination
Part affected:
discoloured vein of chlorotic leaf
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
Pukekohe
Georeferences:
Latitude and Longitude (WGS84):  -37.2  174.9 
Verbatim locality:
Pukekohe
Verbatim collector:
C.N. Hale
Standardised collector:
Christopher N. Hale
Verbatim date:
Jul 1974
Start date:
1974-07
Country:
New Zealand
New Zealand Area Codes:
Auckland
Culture flags
Price Category:
Category 1
Culture notes
Pathogenic to:
cabbage
External links
GenBank:

CP012146 - rnpA, rpmH, gyrB, gltB, lldD, glnA, dkgB, glpK, gidA, ubiA, trpD, trpC, purH, groEL, aceE, treA, cca, hppA, gltA, garD, gudD, rph, sucC, ruvB, relA, gcvT, fadE, prfC, hemE, aroK, sufC, pyrB, murD, gpmA, leuS, tldD, pmbA, dcd, rimO, glmM, nusA, truB, rplT, ihfA, tgt, secD, potG, mutL, rpmJ, rpsA, guaA, ugpC, uvrC, sirA, clpA, clpS, flgA, flgB, flgD, flgG, flgH, flgJ, flgK, fliF, fliA, motC, acnA, greA, carB, hisH, hisD, ispG, panB, hflB, eno, pyrG, rplI, rpsR, sbcB, ppnK, aspA, sucA, dnaK, smpB, emrB, asnB, frr, fliI, ssaR, rpsP, ispH, obgE, minC, dnaE2, prpB, fabG, rpmF, recR, cysW, rplQ, secY, rplX, rplW, rplD, rpsJ, tuf, fusA, rpoB, rplL, nusG, ychF, prfA, rbn, secA, murC, glyA, cpsB, glmU, alr, rpsU, pyrE, argS, uvrD, rpmB, actP, tatA

PRJNA283326 - Xanthomonas campestris pv. campestris strain:ICMP 4013 Genome sequencing

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Literature:

Desai, Dhairyasheel; Li, Jin-Hua; van Zijll de Jong, Eline; Braun, Robert; Pitman, Andrew; Visnovsky, Sandra; Hampton, John; Christey, Mary (2015)Draft Genome Sequences of Two New Zealand Xanthomonas campestris pv. campestris Isolates, ICMP 4013 and ICMP 21080.Genome Announcements3(5). DOI: 10.1128/genomeA.01247-15

Ghazalibiglar, Hoda; Hampton, John G.; van ZijlldeJong, Eline; Holyoake, Andrew (2016)Evaluation of Paenibacillus spp. isolates for the biological control of black rot in Brassica oleracea var. capitata (cabbage).Biocontrol Science and Technology26(4)504-515. DOI: 10.1080/09583157.2015.1129052

Rubel, Mehede Hassan; Hossain, Mohammad Rashed; Nath, Ujjal Kumar; Natarajan, Sathishkumar; Lee, Ji-Hee; Jung, Hee-Jeong; Kim, Hoy-Taek; Park, Jong-In; Nou, Ill-Sup (2019)Development of a PCR test for detection of Xanthomonas campestris pv. raphani.Australasian Plant Pathology48(2)179-182. DOI: 10.1007/s13313-019-0614-z

Afrin, Khandker Shazia ; Rahim, Md Abdur ; Jung, Hee-Jeong ; Park, Jong-In ; Kim, Hoy-Taek ; Nou, Ill-Sup (2019)Development of Molecular Marker through Genome Realignment for Specific Detection of Xanthomonas campestris pv. campestris Race 5, a Pathogen of Black Rot Disease.Journal of Microbiology and Biotechnology29(5)785-793. DOI: 10.4014/jmb.1901.01050

Afrin, Khandker Shazia; Rahim, Md Abdur; Rubel, Mehede Hassan; Park, Jong-In; Jung, Hee-Jeong; Kim, Hoy-Taek; Nou, Ill-Sup (2020)Development of PCR-Based Molecular Marker for Detection of Xanthomonas campestris pv. campestris Race 6, the Causative Agent of Black Rot of Brassicas.The Plant Pathology Journal36(5)418-427. DOI: 10.5423/PPJ.OA.06.2020.0103

LAALA, Samia; CESBRON, Sophie; KERKOUD, Mohamed ; VALENTINI, Franco; BOUZNAD, Zouaoui ; JACQUES, Marie-Agnès; MANCEAU, Charles (2021)Characterization of Xanthomonas campestris pv. campestris in Algeria.Phytopathologia Mediterranea60(1)51-62. DOI: 10.36253/phyto-11726

Culture events
Isolated:
Date:
01 July 1974 (Verbatim: 01 Jul 1974)
Deposited:
Note:
Derived from earliest batch date
Actioned by:
Christopher N. Hale (Reference number 1823)
Date:
01 September 1974 (Verbatim: 01 Sep 1974)
Assigned reference numbers
PDDCC:
PDDCC 4013
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice