Specimen Details

ICMP 3125 – Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 3125

Type status:

Pathotype strain

Culture type:

Bacterial Culture

Database record added:

25 January 2002

Database record updated:

03 December 2021

Components

Primary component

Active identification

Determined name:

Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al. 1990

Determiner:

Identification date:

Preferred name:

Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al.

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Lysobacterales

Family:

Lysobacteraceae

Identification type:

Determination

Associations:

isolated from Oryza sativa L.

Other identifications

Identification

Determined name:

Xanthomonas oryzae pv. oryzae

Determiner:

Identification date:

Preferred name:

Xanthomonas oryzae pv. oryzae (ex Ishiyama 1922) Swings et al.

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Oryza sativa L.

Determiner:

Identification date:

Preferred name:

Oryza sativa L.

Division:

Tracheophyta

Class:

Liliopsida

Order:

Poales

Family:

Gramineae

Vernacular name:

rice

Identification type:

Determination

Part affected:

leaf blight and wilt

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Elura, Andhra Pradesh

Verbatim locality:

Elura, Andhra Pradesh

Verbatim collector:

Y.P. Rao

Standardised collector:

Y. P. Rao

Verbatim date:

Jan 1965

Start date:

1965-01

Country:

India

Culture flags

MPI:

Restricted Culture

Price Category:

Category 2

MPI:

Unwanted Organism

Culture notes

Pathogenic to:

rice (Rao)

External links

GenBank:

HM181895 - genomic DNA

HM469994 - rpoB

KX094389 - 23S ribosomal RNA

CP031697 - dnaA, recF, gyrB, cls, hpaP, glgA, treZ, malQ, treY, glgX, glgB, treS, speA, mnmG, lpxO, bioC, bioH, plsB, egtB, egtD, glnA, amt, ntrC, recC, recB, recD, higA, fabR, xylA, ttcA, rdgC, tatB, tatC, glyQ, zapE, uraD, puuE, purU, msuE, kdgT, rho, trxA, rhlB, ftsE, rpoH, aceE, secB, queF, trpD, trpC, coq7, bfr, putA, coxB, ctaD, cydB, motB, motA, msrB, alr, lpdA, glmS, gloA, gph, queD, maiA, rfbB, rfbA, rfbC, rfbD, pssA, rimI, lptF, lptG, xerD, gspE, gspG, gspH, gspD, cas2, cas1c, cas4, cas7c, cas8c, cas5c, fabD, fabG, fabF, mltG, prpR, acnD, prpF, hflK, leuC, leuD, leuB, thiC, mpl, typA, kbl, cysT, cysW, cysA, lpxH, ppx, ppk1, phoR, phoB, grxC, clpX, gloB, moaA, moaC, ffs, recR, arsC, grxD, rsgA, phbB, rpiA, ssrS, zapA, hemW, rdgB, recG, tkt, modC, gap, azu, soxR, mgtE, ptsP, rapZ, raiA, lptB, lptA, lptC, murA, rimM, trmD, clpB, btuB, cobO, cobT, bla, sufD, sufC, sufB, ruvX, ssb, tssK, tssJ, tssB, tssC, hcp, tssE, tssF, tssG, tssH, imuA, pgk, pyk, cysK, cobA, cysI, cysN, trmB, thiS, rsfS, rlmH, tldD, pmbA, tilS, apbC, rimO, greB, truA, trpB, secG, nuoE, nuoF, nuoG, nuoK, nuoN, rimP, nusA, rbfA, truB, pnp, nadC, purE, pilV, ssrA, mutY, ftsY, mutS, radA, ruvC, ruvA, ruvB, ybgC, tolQ, tolR, tolA, tolB, pal, ybgF, queE, recQ, hrpA, pqqE, pqqD, pqqB, pqqA, mrcB, tsaB, gshB, nudE, cysQ, gcvT, mmsA, mmsB, rpoE, lepB, recO, rlmD, pdeM, thpR, mprF, rnfB, cysC, phaZ, lpxD, bamA, rseP, uppS, rpsB, map, dapD, dapE, parC, bamE, recN, hrcA, grpE, dnaK, dnaJ, sucB, fucP, rnr, rlmB, cheY, flhF, flhA, flhB, fliR, fliP, fliO, fliN, fliM, fliJ, fliG, fliF, fliE, rpoN, fliS, flgL, flgK, flgJ, flgI, flgH, flgG, flgF, flgD, flgC, flgB, flgA, flgM, mnmA, clpA, trxB, lolA, crcB, rlmN, pilW, bamB, der, moeB, mtnC, ccmE, ccmD, ccmB, ccmA, scpB, lapB, galU, mntR, tadA, phaE, phaC, hisD, hisH, hisA, hisF, pgsA, uvrC, msbA, sdhD, sdhC, ugpC, zwf, pgl, arsB, arsH, panB, folK, pcnB, aroA, msrP, msrQ, hutC, hutH, hutG, mtnA, genX, ligA, zipA, rpsR, kynU, rlmL, nth, pstS, pstC, pstA, pstB, phoU, rnt, secF, secD, yajC, queA, ggt, rsmD, htpG, cydC, cydD, cydX, proB, dksA, yidD, efp, epmB, dbpA, htpX, phaR, mutL, tsaE, queG, rnd, petA, miaB, potA, motD, cheD, acnA, lysS, prfB, recJ, greA, yeiP, xylB, thiD, csrA, recX, ubiB, hflX, miaA, folP, yhbY, truD, ftsB, parE, tssA, tagF, tssM, tssL, tagH, tssI, cyoD, cyoC, cyoB, cyoA, murJ, obgE, rplU, uvrA, tesB, otsB, otsA, pgeF, rluD, bamD, pilB, asnB, dcm, rlmJ, minC, minD, minE, gcvP, rplQ, secY, tuf, fusA, rpoC, rpoB, rplK, nusG, secE, ychF, lolB, prfA, moaB, ppk2, ybaK, sufT, pip, prmC, ahpC, msrA, rlmM, lptD, pdxA, rsmA, apaG, hemP, dusB, metF, ftsZ, ftsA, murG, ftsW, murF, ftsL, rsmH, mraZ, rnpB, rsmI, kdpB, kdpA, thiL, ribB, ribD, nrdR, ettA, fghA, gfa, pgaA, pgaB, pgaC, pgaD, nagA, gluP, gnd, lipA, lipB, mltB, rodA, mrdA, mreD, mreC, hslU, xerC, mdoH, treA, yegS, hppD, folB, tsaD, rpoD, ribA, rsmB, dprA, sppA, aroQ, accC, yccS, erpA, rrf, xth, coaBC, pcaC, pcaD, pcaG, pcaH, pcaF, bioF, rarD, yedA, rocF, dusA, dinG, tnpA, mlaD, benE, dkgB, hrpB, rsmG, rpmG, ligK, rmuC, folE, mnmE, yidC

PRJNA485465 - Xanthomonas oryzae pv. oryzae strain:ICMP3125 Genome sequencing

Literature:

Ferreira-Tonin, Mariana; Rodrigues-Neto, Júlio; Harakava, Ricardo; Destéfano, Suzete Aparecida Lanza (2012)Phylogenetic analysis of Xanthomonas based on partial rpoB gene sequences and species differentiation by PCR-RFLP. International Journal of Systematic and Evolutionary Microbiology 62(Pt_6)1419-1424. DOI: 10.1099/ijs.0.028977-0

Culture events

Isolated:

Date:

01 January 1965 (Verbatim: 01 Jan 1965)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

Douglas W. Dye (Reference number YK9)

Date:

01 June 1986 (Verbatim: 01 Jun 1986)

Transferred from:

Actioned by:

Y. P. Rao (Reference number XO8)

Duplicates

Belgian Coordinated Collections of Microorganisms: LMG 5047

Direction:

Duplicate

American Type Culture Collection: ATCC 35933

Direction:

Duplicate

French Collection for Plant-associated Bacteria: CFBP 2532

Direction:

Duplicate

Fera (UK): NCPPB 3002

Direction:

Duplicate

Assigned reference numbers

NZRCCNo:

NZRCC 10425

PDDCC:

PDDCC 3125

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice