Specimen Details

ICMP 26287 – Pectobacterium Waldee

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 26287

Culture type:

Bacterial Culture

Database record added:

10 November 2025

Database record updated:

01 December 2025

Components

Primary component

Active identification

Determined name:

Paracidovorax

Determiner:

August Thomas

Identification date:

2025-02-24 (Verbatim: 24 Feb 2025)

Preferred name:

Pectobacterium Waldee

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Enterobacterales

Family:

Pectobacteriaceae

Identification type:

Received as

Note:

WGS analysis

Associations:

isolated from Lactuca sativa L.

Other components

Active identification

Determined name:

Lactuca sativa L.

Determiner:

Identification date:

Preferred name:

Lactuca sativa L.

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Asterales

Family:

Compositae

Vernacular name:

Lettuce

Identification type:

Received as

Part affected:

Leaf

Collection events

Primary collection event

Collection event type:

Unknown

Verbatim locality:

BonAir

Verbatim collector:

Augustus Thomas

Standardised collector:

Augustus Thomas

Collectors reference no.:

BLS4

Verbatim date:

1 Sep 2017

Start date:

2017-09-01

Country:

Trinidad and Tobago

Culture flags

MPI:

Restricted Culture

Price Category:

Category 2

Culture notes

Pathogenic to:

Lettuce

Growth Conditions:

Nutrient agar, 25-30C, 48 hours

Characterised as:

Creamy white, slightly raised, mucoid

External links

GenBank:

[TRUNCATED] CP136797 - purT, ptsP, dbpA, dtd, ybeY, ruvA, ruvB, ttcA, ugpC, eutC, dapF, dksA, hslV, hslU, mraZ, rsmH, ftsL, murF, mraY, murD, ftsW, murG, murC, ftsA, ftsZ, lpxC, thiC, ruvC, mtgA, aroE, rodA, tldD, mpl, accB, accC, prmA, ampD, ccsA, ffh, mdoH, miaB, ychF, dusB, purH, hemL, ruvX, pyrR, terL, pcaF, pcaD, catC, kefC, trmL, coxB, ctaD, cyoE, rpoH, ftsY, rsmD, coaD, moeB, gpmA, grxC, secB, panC, panB, nadC, nadA, queE, bioF, bioD, bioA, nadB, metG, apbC, fdhD, yjjJ, radC, ispH, serS, recJ, lolD, pdxA, mscL, petA, secA, argJ, zapD, coaE, pilB, rplU, rpmA, obgE, proB, grxD, prmC, prfA, hemA, ugpQ, ugpE, ugpA, ugpB, serA, ubiE, ubiB, aspS, nudB, clsB, folE, guaD, dcd, pth, ispE, mutM, mutY, rapZ, recN, hrcA, greB, rpoZ, gmk, rph, rdgB, hemW, cas6f, csy3, csy2, csy1, cas3f, cas1f, araD, gcvA, chrA, paoC, paoA, mnmA, ssb, cueR, tauA, gstA, mnmG, rsmG, cobM, cbiE, cobI, cobJ, ubiM, rocF, pssA, minC, minD, minE, queC, gtdA, maiA, urtA, urtB, urtC, urtD, urtE, metH, adeC, imuA, glnK, amt, glcE, glcF, lplT, alr, radA, pyrE, gatB, gatA, gatC, mreC, mreD, mrdA, creD, creC, hemB, rpsL, rpsG, fusA, cysC, hemH, aroC, nrdR, glyA, rnr, glgA, treZ, glgX, glgC, hutC, hutH, hutU, hutI, hutG, asd, infA, msrB, ggt, pncB, rmuC, crcB, mnhG, lapB, rpsA, pheA, serC, gyrA, ubiG, gph, ssrA, nadE, rpoN, carA, carB, greA, ftsH, folP, glmM, ppk1, pstS, pstC, pstA, pstB, phoU, phoB, phoR, sbcD, rho, trxA, ffs, dnaX, recR, gloB, rnhA, mobA, moaA, ppa, epsC, cysT, cysW, bla, argA, hrpA, lexA, adk, kdsB, lpxK, xseA, icd, kdgD, azu, ygiD, uvrB, iscR, iscU, iscA, hscB, hscA, fdx, dnaQ, rpiA, folD, aceE, aceF, lpdA, prpC, dcm, fghA, ybaL, ettA, rpsB, tsf, pyrH, frr, uppS, ispC, rseP, bamA, lpxD, fabZ, lpxA, lpxB, rnhB, trbL, trbK, trbJ, pepN, prfB, plsY, murB, sigJ, argG, folC, purF, gltX, dmeF, phaR, rimO, efp, earP, gsiB, gsiC, gsiD, uvrC, pgsA, mltG, tmk, msbA, tolB, pal, ybgF, rimP, nusA, infB, rbfA, truB, typA, smpB, guaB, guaA, tagH, tssJ, tssK, tssM, tagF, tssA, tssB, tssC, tssE, tssF, tssG, tssH, putA, rlmD, yedA, aceA, thrS, infC, rpmI, rplT, pheS, pheT, fabI, odhB, zapE, dnaE, clpS, clpA, sbcB, adhP, adh, upp, purD, hemF, rsfS, rlmH, rng, lptG, lptF, gcvP, gcvH, gcvT, katB, garD, katG, ilvN, ilvC, aat, def, map, purL, egtD, egtB, uraD, puuE, uraH, xdhC, xdhB, xdhA, kynA, kynU, kynB, argF, mqo, rpsT, murJ, queF, yaaA, rpmF, plsX, fabD, fabG, acpP, fabF, rpoE, lepA, lepB, rnc, era, recO, acpS, nagZ, lysS, gmd, accD, trpA, trpB, truA, leuB, leuD, leuC, dnaJ, dnaK, grpE, rpsF, priB, rpsR, rplI, dnaB, thrC, mobB, moaD, moaE, clpB, pilV, ribD, rpsO, pnp, tpiA, secG, nuoE, nuoF, nuoG, nuoH, nuoI, nuoK, nuoL, nuoN, miaA, mutL, tsaE, queG, pyrB, xerD, eno, kdsA, coaBC, dut, bamC, dapA, parC, bfr, ahpC, ahpF, ppsA, rpoD, dnaG, surE, scpB, ndk, rlmN, pilW, ispG, hisS, bamB, der, hfq, hflX, hflK, hflC, rsmA, metW, lptC, mnmE, yidC, yidD, rpmH, dnaA, dnaN, gyrB, dinG, leuA, uvrA, arsB, arsH, pyrF, dprA, argC, sucC, sucD, moaC, purB, ssuD, sfnG, msuE, glnE, yajC, secD, secF, recX, recA, xopAC, gap, tkt, speD, pyk, fba, corA, rimI, tsaB, dacB, purE, raiA, hprK, fur, dapB, leuS, lptE, holA, mntP, trkA, gshA, gshB, rsgA, orn, cobW, cobN, polA, argH, pbpC, purM, hda, pcnB, folK, cysM, galU, hemC, ppc, yccS, flhC, flhD, xseB, dxs, treS, glgB, modC, modB, modA, mutS, hpnE, hpnD, hpnC, tig, clpP, clpX, lon, umuD, murI, fumC, proX, proW, proV, acs, ilvD, lgt, ccoS, ccoN, ccoO, ccoP, ccoG, fnr, hemN, cobO, bluB, cbiB, cobT, tatC, tatB, tatA, hisI, hisF, galE, pelF, pelG, hisA, hisH, hisB, hisD, hisG, murA, mlaD, mlaE, aroB, cyaY, lysA, msrP, ccsB, yihA, metK, hydA, preA, asnB, groL, pgi, tal, zwf, coq7, ilvA, gspG, gspI, gspK, gspL, gspM, gspN, gspD, gspF, cphA, ada, alkB, wecB, glmS, glmU, tyrS, mdtD, erpA, rpsI, rplM, rlmJ, metF, ahcY, slmA, argB, rfbC, rfbA, rfbD, rfbB, lysM, gmhB, glyS, glyQ, fabB, fabA, lnt, hppD, phhA, rbsK, rbsD, trxC, otsB, otsA, dkgB, rnpB, rtcR, rtcA, cysK, htpX, pyrC, pepE, aceK, can, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, kdpF, kdpA, kdpB, kdpC, kdpE, lipA, lipB, atpB, atpE, atpA, atpG, atpD, pdeM, argS, lptA, lptB, thiL, apaG, rpe, trpE, sctS, sctR, sctQ, sctV, sctU, sctT, sctN, sctL, sctJ, sctC, trpD, trpC, queA, recG, serB, mfd, ispF, ompR, sdhA, sdhD, sdhC, tam, acnB, cysN, cysD, cyoD, cyoC, cyoB, cyoA, tolA, tolQ, nusB, ribH, ribBA, mdcB, mdcG, mdcC, mdcA, xopZ, ylqF, soxR, aroQ, arfB, cysS, tilS, tadA, thiS, thiD, mnmC, ssuE, ssuC, alaS, trmB, gluQRS, rlmB, ribB, xopAJ, mmsB, cycA, metE, purU, ltaE, rsmI, rplQ, rpoA, rpsD, rpsK, rpsM, rpmJ, secY, rplO, rpmD, rpsE, rplR, rplF, rpsH, rpsN, rplE, rplX, rplN, glpK, proC, ubiA, arsC, lspA, ileS, purN, xopAW, rpmG, rpmB, trxB, lolA, rpsP, rimM, trmD, rplS, cheD, fliR, fliQ, fliP, fliN, fliM, fliJ, fliI, fliG, fliF, fliE, fliS, fliD, rfbH, rfbG, rfbF, motA, motB, cheY, flhA, flhF, flgM, flgA, flgB, flgC, flgE, flgF, flgG, flgJ, flgK, flgL, xopAU, msrA, pdxH, edd, eda, gloA, fhuF, ureG, ureE, ureC, pcp, pxpB, argE, htpG, xrtH, ligD, bioB, meaB, scpA, xop

Culture events

Deposited:

Actioned by:

Augustus ThomasRachel BallyDuraisamy Saravanakumar

Date:

10 November 2025 (Verbatim: 10-11-2025)

Isolated:

Actioned by:

August Thomas (Reference number BLS4)

Date:

01 September 2017 (Verbatim: 01 Sep 2017)

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice