Specimen Details

ICMP 25022 – Xanthomonas hawaiiensis Chuang et al.

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 25022

Type status:

Type strain

Culture type:

Bacterial Culture

Database record added:

13 July 2023

Database record updated:

14 June 2025

Components

Primary component

Active identification

Determined name:

Xanthomonas hawaiiensis Chuang et al.

Determiner:

Mohammad Arif

Identification date:

Preferred name:

Xanthomonas hawaiiensis Chuang et al.

Division:

Pseudomonadota

Class:

Gammaproteobacteria

Order:

Lysobacterales

Family:

Lysobacteraceae

Identification type:

Determination

Note:

Multi Locus Sequence Analysis, Next Generation Sequencing

Type status:

Type strain

Associations:

isolated from Spathiphyllum

Other components

Active identification

Determined name:

Spathiphyllum

Determiner:

Identification date:

Preferred name:

Spathiphyllum

Division:

Tracheophyta

Class:

Liliopsida

Order:

Alismatales

Family:

Araceae

Vernacular name:

Peace lily

Identification type:

Determination

Part affected:

Leaf

Substrate:

2, 3, 5-triphenyltetrazolium chloride (TZC) Medium

Collection events

Primary collection event

Collection event type:

Unknown

Standard locality

Location:

Oahu, Hawaii

Georeferences:

Latitude and Longitude (WGS84): 21.4390774159404 -157.99958491448194 (WGS84 21.439077 -157.999585)

Verbatim locality:

Oahu, Hawaii

Verbatim collector:

Anne Alvarez

Standardised collector:

Anne M. Alvarez

Verbatim date:

05 Jan 1985

Start date:

1985-01-05

Country:

United States

Culture flags

Price Category:

Category 2

MPI:

Restricted Culture

Culture notes

Growth Conditions:

Grows optimally at 28 degrees C on yeast dextrose calcium carbonate (YDC) agar

Characterised as:

Yellow colony on YDC

External links

GenBank:

CP115873 - dnaA, dnaN, recF, gyrB, exbB, cls, adhP, lldD, lldR, kduI, kduD, phhA, rmuC, mlaD, recC, recB, recD, folE, rrf, gltB, ligD, glnA, amt, ntrC, secB, ubiB, arfB, dcp, cas6f, csy3, csy2, csy1, cas3f, cas1f, lepB, aceB, aceA, pobA, pcaF, pcaH, pcaG, pcaD, pcaC, hrpB, panE, cpaB, hemB, aroE, dinG, katB, acpA, ilvD, aroD, mnmG, bioC, bioH, bioF, bioB, ubiA, speE, speA, argS, radC, coaBC, dut, pyrE, tyrS, putA, coxB, ctaD, cyoE, dnaG, rpsU, tsaD, folB, xylB, xylA, glpD, glpK, fucP, pdhA, hppD, hmgA, queF, aceK, rho, trxA, rhlB, ftsE, ftsX, ung, rpoH, sppA, dprA, def, fmt, rsmB, ribA, dtd, rpoD, treS, glgB, fabR, poxB, glgX, treY, malQ, treZ, glgA, mdoH, hemC, dapF, xerC, hslV, hslU, sufT, ybaK, wrbA, ppk2, moaB, prfA, hemA, lolB, ispE, pth, ychF, tuf, secE, nusG, rplK, rplA, rplJ, rplL, rpoB, rpoC, rpsL, rpsG, fusA, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplN, rplX, rplE, rpsN, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY, rpsM, rpsK, rpsD, rpoA, rplQ, typA, gstA, prpE, kbl, cysW, tdh, folC, purF, lpxH, ppx, ppk1, phoR, phoB, grxC, tig, clpP, clpX, lon, gloB, rnhA, dnaQ, moaA, moaC, ffs, dnaX, recR, rpmF, fabD, fabG, acpP, fabF, mltG, tmk, imuA, lexA, prpB, prpC, acnD, prpF, pbpC, pilH, hflK, gcvP, minE, minD, minC, purT, tesB, uvrA, rplU, rpmA, obgE, rpsT, murJ, ileS, lspA, ispH, cyoA, cyoB, cyoC, cyoD, radA, gguC, yjfF, ccsA, ffh, rpsP, rimM, trmD, rplS, coaE, pilB, sucC, sucD, egtD, egtB, rluD, pgeF, otsA, otsB, clpB, ybaL, ampR, bla, aspS, ruvC, ruvA, ruvB, ybgC, tolQ, tolR, tolA, tolB, pal, ybgF, queE, queC, recQ, hrpA, pqqE, pqqD, pqqC, pqqB, mrcB, tsaB, gshB, pilG, bioA, nudE, cysQ, mazG, gcvT, gcvH, mtgA, mdtD, hemE, aroB, pdxH, soxR, proC, ruvX, mgtE, ptsP, rapZ, hprK, raiA, lptB, lptA, lptC, murA, purN, purM, hda, queA, phaZ, dnaE, lpxB, lpxA, fabZ, lpxD, bamA, rseP, dxr, uppS, frr, pyrH, tsf, rpsB, map, dapD, dapE, asnB, bfr, parC, rnr, rlmB, rnt, phoU, pstB, pstA, pstC, pstS, nth, rlmKL, ald, fdhD, potA, ybeY, miaB, petA, nadC, purE, grxD, ppnN, pilV, uvrB, virB11, thrS, infC, rpmI, rplT, pheS, pheT, dxs, xseA, queG, tsaE, mutL, phaR, gluQRS, htpX, dbpA, ssrA, smpB, bamE, fur, recN, hrcA, grpE, dnaK, dnaJ, pdxY, lpdA, sucB, purB, metH, sbcB, kynU, can, asnS, rpsF, rpsR, rplI, smc, zipA, ligA, epmA, mtnA, gyrA, hutG, hutH, hutI, hutC, msrQ, msrP, serC, pheA, aroA, serS, zupT, ykgO, cmk, rpsA, lapB, galU, ndk, rlmN, pilW, bamB, der, moeB, folD, guaB, guaA, arsH, arsN2, mntR, tadA, orn, ppsA, phaE, pabB, ccmD, ccmE, crcB, dmeF, lolA, trxB, aat, infA, clpA, clpS, mnmA, hflD, flgM, flgA, flgB, flgC, flgD, flgE, flgG, flgH, flgJ, flgK, flgL, fliD, fliS, rpoN, fliE, fliF, fliG, fliJ, fliM, fliN, fliO, fliP, fliR, flhB, flhA, flhF, cheY, motD, cheD, acnB, acnA, lysS, prfB, recJ, greA, carB, carA, dapB, feoB, yeiP, serA, mtnC, hisIE, hisF, hisA, hisH, hisB, hisC, hisD, hisG, hisS, thrC, thrA, murB, ispG, pgi, panC, panB, folK, pcnB, folE2, dgoD, dapA, thiD, csrA, alaS, recX, recA, hflX, hfq, miaA, folP, ftsH, rlmE, yhbY, surE, truD, ispF, ispD, ftsB, eno, kdsA, parE, pfkB, hemN, pgsA, uvrC, kdsB, lpxK, msbA, lolD, sdhA, sdhD, sdhC, ugpC, zwf, glk, pgl, edd, scpB, ccmA, ccmB, ccmC, cydC, cydD, cydB, cydX, proB, argH, argC, cysS, dksA, yidD, ubiG, efp, epmB, secF, secD, yajC, tgt, ubiM, adeC, gltX, creD, creC, creB, rlmJ, mfd, gpmA, nfi, murD, murL, sufB, sufC, sufD, upp, ggt, coaD, rsmD, htpG, ftsY, mutY, rnd, pnp, rpsO, truB, rbfA, infB, nusA, rimP, nuoN, nuoL, nuoK, nuoI, nuoH, nuoG, nuoF, nuoE, secG, tpiA, glmM, accD, trpA, trpB, truA, aroC, prmB, asd, nudK, greB, rimO, dcd, apbC, gorA, tilS, pmbA, tldD, rng, rlmH, rsfS, nadD, holA, leuS, mmuM, metG, rnfB, mprF, thpR, pdeM, nagZ, rlmD, recO, era, rnc, lepA, rpoE, mutS, katG, rimK, thiS, trmB, mscL, cysN, cysD, cysI, arsC, cobA, cysK, pyk, gap, trxC, modA, modB, tkt, recG, rpoZ, gmk, rph, rdgB, hemW, pepQ, ssrS, rpiA, thiE, hemL, azu, mpl, ppa, thiC, ilvC, ilvG, leuC, leuD, leuB, waaA, phbB, rsgA, fghA, gfa, yihA, nagA, gnd, lipA, lipB, mltB, rodA, mrdA, mreD, mreC, ubiE, pip, prmC, ahpC, ahpF, rnk, tal, msrA, rlmM, comJ, ubiH, lptD, pdxA, rsmA, apaG, lgt, dusB, metK, ppc, ahcY, metF, secA, lpxC, ftsZ, ftsA, murC, murG, ftsW, mraY, murF, ftsL, rsmH, rnpB, rsmI, kdpC, kdpB, kdpA, thiL, nusB, ribH, ribB, ribD, nrdR, ettA, bcsZ, bcsB, bcsA, bcsD, pncB, pnuC, gspD, gspM, gspG, gspE, purL, xerD, lptG, lptF, rimI, pssA, rfbD, rfbC, rfbA, rfbB, maiA, queD, bioD, btuB, gph, dinB, fabA, fabB, glmS, glmU, atpD, atpG, atpA, atpE, atpB, aceF, salA, catA, catC, alr, msrB, motA, motB, treA, cycA, aceE, glnE, proP, groL, aroQ, accB, accC, prmA, fis, purH, purD, yccS, nudC, erpA, rpsI, rplM, coq7, sugE, speD, crp, trpC, trpD, trpE, yegS, rpe, fhuE, rarD, yedA, rocF, birA, dusA, metE, purU, ompR, zapE, xanC, hemF, polA, clsB, uvrD, rpmG, rpmB, rsmG, xth, yjjG, acs, mntP, pyrF, plsB, ttcA, hemH, tatA, tatB, tatC, glyQ, glyS, rep, mutM, mnmE, yidC, rnpA, rpmH

OP962219 - 16S ribosomal RNA

Literature:

Chuang, Shu-Cheng; Dobhal, Shefali; Alvarez, Anne M.; Arif, Mohammad (2024)Three new species, Xanthomonas hawaiiensis sp. nov., Stenotrophomonas aracearum sp. nov., and Stenotrophomonas oahuensis sp. nov., isolated from the Araceae family.Frontiers in Microbiology15. DOI: 10.3389/fmicb.2024.1356025

Culture events

Deposited:

Actioned by:

Mohammad Arif

Date:

10 July 2023 (Verbatim: 10 Jul 2023)

Isolated:

Actioned by:

Robin Lipp (Reference number A6251 (D-93))

Date:

05 January 1985 (Verbatim: 05 Jan 1985)

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice