Systematics Collections Data

ICMP 24394 – Xanthomonas indica Rana et al.

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 24394
Type status:
Type strain
Culture type:
Bacterial Culture
Database record added:
23 February 2022
Database record updated:
31 October 2023
Components
Primary component
Active identification
Determined name:
Xanthomonas indica Rana et al.
Determiner:
Rekha Rana
Determiners reference no.:
PPL560
Identification date:
2021-05-06 (Verbatim: 06 May 2021)
Preferred name:
Xanthomonas indica Rana et al.
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Lysobacterales
Family:
Lysobacteraceae
Identification type:
Determination
Note:
16S rRNA sequencing, genomotaxonomy
Type status:
Type strain
Associations:
isolated from Oryza sativa L.
Other components
Active identification
Determined name:
Oryza sativa L.
Determiner:
Identification date:
Preferred name:
Oryza sativa L.
Division:
Tracheophyta
Class:
Liliopsida
Order:
Poales
Family:
Gramineae
Identification type:
Determination
Part affected:
Seeds
Collection events
Primary collection event
Collection event type:
Unknown
Standard locality
Location:
Ropar, Punjab
Georeferences:
Latitude and Longitude (WGS84):  30.966100  76.523100 
Verbatim locality:
Ropar, Punjab
Verbatim collector:
Rekha Rana
Standardised collector:
Rekha Rana
Verbatim date:
29 Jan 2021
Start date:
2021-01-29
Country:
India
Georeferences:
Latitude and Longitude (WGS84):  30.966100  76.523100 
Culture flags
MPI:
Restricted Culture
Price Category:
Category 2
Culture notes
Characterised as:
Yellow mucoid colonies
Growth Conditions:
NA, PSA, GYCA, 28 degreesC, 24-48 hrs
Pathogenic to:
None
External links
GenBank:

JAKJPQ000000000 - genomic DNA

Literature:

Rana, Rekha; Madhavan, Vishnu Narayanan; Saroha, Tanu; Bansal, Kanika; Kaur, Amandeep; Sonti, Ramesh V.; Patel, Hitendra K.; Patil, Prabhu B. (2022)Xanthomonas indica sp. nov., a non-pathogenic bacterium isolated from healthy rice (Oryza sativa) seeds from India. DOI: 10.1101/2022.03.16.484583

Note: preprint

Rana, Rekha; Madhavan, Vishnu Narayanan; Saroha, Tanu; Bansal, Kanika; Kaur, Amandeep; Sonti, Ramesh V.; Patel, Hitendra K.; Patil, Prabhu B. (2022)Xanthomonas indica sp. nov., a Novel Member of Non-Pathogenic Xanthomonas Community from Healthy Rice Seeds.Current Microbiology79(10). DOI: 10.1007/s00284-022-03001-5

Culture events
Isolated:
Actioned by:
Rekha Rana (Reference number PPL560)
Date:
29 January 2021 (Verbatim: 29 Jan 2021)
Deposited:
Note:
ORCID 0000-0003-2720-1059 CSIR - Institute of Microbial Technology, Chandigarh (India)
Actioned by:
Prabhu Patil
Date:
18 February 2022 (Verbatim: 18 Feb 2022)
Transferred from:
Actioned by:
Microbial Type Culture Collection (Reference number MTCC13185)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice