Systematics Collections Data

ICMP 24361 – Dickeya colocasiae Boluk et al. [in press]

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 24361
Culture type:
Bacterial Culture
Database record added:
19 November 2021
Database record updated:
09 August 2023
Components
Primary component
Active identification
Determined name:
Dickeya colocasiae Boluk et al. [in press]
Determiner:
Mohammad Arif
Identification date:
2021-02-10 (Verbatim: 10 Feb 21)
Preferred name:
Dickeya colocasiae Boluk et al. [in press]
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Enterobacterales
Family:
Pectobacteriaceae
Identification type:
Determination
Note:
Whole Genome Sequencing and Multi-Locus Sequence Typing
Type status:
Type strain
Associations:
isolated from Colocasia esculenta (L.) Schott
Other components
Active identification
Determined name:
Colocasia esculenta (L.) Schott
Determiner:
Identification date:
Preferred name:
Colocasia esculenta (L.) Schott
Division:
Tracheophyta
Class:
Liliopsida
Order:
Alismatales
Family:
Araceae
Identification type:
Determination
Part affected:
Corm (Tuber)
Collection events
Primary collection event
Collection event type:
Unknown
Standard locality
Location:
Kaneohe, Hawaii
Georeferences:
Latitude and Longitude (WGS84):  21.409167  -157.799167 
Verbatim locality:
Kaneohe, Hawaii
Verbatim collector:
Gamze Boluk & Mohammad Arif
Standardised collector:
Gamze Boluk; Mohammad Arif
Verbatim date:
23 Aug 2018
Start date:
2018-08-23
Country:
United States
Culture flags
Price Category:
Category 2
MPI:
Restricted Culture
Culture notes
Growth Conditions:
Optimal growth temperature is 28 degrees C on Nutrient Agar supplement with 4% glucose
Pathogenic to:
Taro
Characterised as:
Whole Genome Sequencing and Multi-Locus Sequence Typing
External links
GenBank:

CP040817 - accD, folC, dedD, cvpA, purF, argT, hisP, yfcG, yfcD, lrhA, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, hybO, hybA, hybB, hybC, hybE, hypA, hypB, hybG, hypD, hypE, hypF, fdnG, fdxH, fdoI, fdhE, ntrB, nirD, cobA, ggt, tssI, cycA, uvrY, uvrC, pgsA, dsrB, flhD, flhC, motA, motB, cheA, cheW, cheR, cheY, cheZ, flhB, flhA, flgM, flgA, flgB, flgC, flgD, flgG, flgH, flgJ, flgK, flgL, fliR, fliQ, fliP, fliO, fliN, fliM, fliL, fliJ, fliI, fliH, fliG, fliF, fliE, fliT, fliS, fliD, fliZ, phoH, fabA, matP, mdoH, mdtG, lpxL, bssS, dinI, pyrC, rluC, yceD, rpmF, plsX, fabD, fabG, acpP, fabF, pabC, mltG, holB, ptsG, hinT, lpoB, nagZ, yegD, lolC, lolD, lolE, nagK, cobB, btuC, btuD, ldtD, asnS, pncB, pepN, ssuB, ssuC, ssuD, ssuE, pyrD, rlmKL, pqiA, pqiB, pqiC, ppsA, rprA, ydiK, pykF, bglG, bglF, purR, ynhF, gloA, slyA, anmK, pdxH, tyrS, pdxY, gstA, ribA, pgpB, lapB, pyrF, yciH, osmB, araD, kdgT, fabI, sapF, sapD, sapC, sapB, sapA, pspF, pspA, pspB, pspC, tyrR, mpaA, zntB, ttcA, hrpA, asr, rstB, rstA, dauA, chaA, guaD, smrA, rsmF, proQ, narL, narX, blaCAR, narH, narJ, narI, yiaY, pptA, hisN, sbmA, feoB, pepT, phoQ, phoP, purB, hflD, mnmA, rluE, htpX, kdgR, thrS, infC, rpmI, rplT, pheM, pheS, pheT, ihfA, nadE, osmE, kdgM, ugpC, kduD, kduI, cspE, rlmA, mntP, manX, pabB, tsaB, fadD, minE, minD, minC, dsbB, fadR, recC, recB, recD, dbpA, ychF, ychH, ispE, lolB, hemA, prfA, prmC, kdsA, pntA, pntB, uspE, fnr, tehA, ydfG, bioD, fumC, manA, araC, araH, araA, ydgT, rsxA, rsxB, rsxC, rsxD, rsxG, cysB, topA, sohB, cobO, rluB, trpD, trpCF, trpB, trpA, ompW, yciA, tonB, cls, oppC, oppB, oppA, adhE, galU, rssB, rssA, purU, xthA, sppA, ansA, pncA, msrB, gapA, ftnA, copD, copC, purT, zwf, pyk, msbB, mepM, znuA, znuC, znuB, ruvB, ruvA, ruvC, nudB, aspS, cmoA, cmoB, argS, murJ, rimJ, mdtH, grxB, cueO, mukB, mukE, mukF, cmoM, elyC, kdsB, lpxK, msbA, sbcB, citG, citX, citF, citE, citD, citC, hisG, hisD, hisC, hisB, hisH, hisA, hisF, ihfB, rpsA, aroA, serC, focA, pflB, yidD, pflA, dmsD, serS, lolA, lrp, trxB, cydD, cydC, infA, clpA, clpS, cspD, hcp, artP, artQ, artM, rlmC, potI, potH, potG, potF, rimK, nfsA, grxA, deoR, rimO, sanA, folE, fghA, fruA, fruK, yeiP, mepS, yejF, rsuA, rplY, yejK, arsC, pxpA, ompX, rhtA, dps, glnH, glnP, glnQ, ybiB, dinG, bglX, cyaB, dusC, rhlE, hlyD, clsB, moaE, moaD, moaC, moaB, moaA, cydB, yvcK, uvrB, bioC, bioF, bioB, bioA, cdd, moeA, moeB, mtfA, mdcH, mdcE, mdcC, mdcA, dsbG, fdnI, phnE, phnD, phnC, phnP, phnN, phnM, phnL, phnK, phnH, phnG, phnF, ygjG, patD, gltP, cbl, hyfB, hyfE, hyfH, nuoB, hycH, hycI, hypT, dsbA, nikA, ftsI, katG, leuD, leuC, efeB, tssM, tssA, tagO, tssH, tssK, tssJ, tagH, tssG, tssF, tssE, tssC, tssB, gndA, cpsG, rfbD, rfbC, rfbA, rffG, wcaJ, wzc, asmA, apbC, metG, modC, modB, modA, modE, modF, galE, galT, galK, galM, gpmA, aroG, nadA, cpoB, pal, tolB, tolA, tolR, tolQ, ybgC, ybgE, cydX, cydA, sucD, sucC, odhB, sucA, sdhA, sdhD, sdhC, pxpB, phrB, kdpF, kdpA, kdpB, kdpC, kdbD, kdpE, seqA, fldA, fur, glnS, nagB, nagA, ubiF, miaB, ybeY, corC, lnt, gltK, leuS, lptE, holA, nadD, rsfS, rlmH, mrdB, rlpA, dacA, lipB, lipA, tatE, crcB, ypfM, dapE, purC, bamC, dapA, hda, uraA, purM, purN, galS, mglB, mglA, mglC, tesA, menE, menC, menB, menH, menD, menF, rcsD, rcsB, rcsC, gyrA, ubiG, nrdA, nrdB, cueR, copA, ybaK, htpG, recR, mscK, acrR, tomB, hha, ffs, tesB, amtB, glnK, queC, ppiD, hupB, clpX, clpP, bolA, ampG, cyoE, panE, yajL, thiI, xseB, ispA, pgpA, thiL, nusB, ribE, ribD, nrdR, mgtA, secF, secD, yajC, tgt, queA, proY, brnQ, pstS, phoR, phoB, sbcD, rdgC, ppnP, aroL, mutS, rof, tilS, accA, dnaE, rnhB, lpxB, lpxA, fabZ, lpxD, skp, bamA, rseP, cdsA, ispU, ispC, pyrH, tsf, rpsB, map, glnD, dapD, truC, xni, rlmM, csdA, csdE, tcdA, mltA, thyA, ptsP, rppH, mutH, trmB, mutY, mltC, ansP, cas1, cas10, csm2, csm3, pilP, queF, azuC, nrfD, alkB, norR, norV, norW, tehB, ribB, yjeH, zipA, cysZ, cysK, ptsH, ptsI, macB, cysM, aroD, ydiB, hemF, tal, nudK, mntH, grpE, nadK, recN, bamE, smpB, ssrA, mltB, iolB, iolE, iolC, iolG, iolD, ddlA, nifJ, acs, actP, lpxP, lpcA, lysS, prfB, recJ, dsbC, xerD, fldB, sdhE, ygfZ, gcvP, gcvH, gcvT, fucO, alsS, budA, rsmC, rimI, deoD, deoB, deoA, deoC, yrbN, nlpI, pnp, rpsO, truB, rbfA, infB, nusA, rimP, secG, glmM, folP, ftsH, rlmE, yhbY, greA, dacB, cgtA, rpmA, rplU, ispB, mdh, argR, tsaD, rpsU, dnaG, rpoD, apbE, uhpT, uhpB, uhpA, rlmG, uxaC, exuR, mzrA, zur, lexA, plsB, ubiC, groL, aspA, cutA, ccdA, cadR, uraD, ahpF, ahpC, osmY, prfC, radA, nadR, ssrS, zapA, pepP, ubiH, ubiI, rhaR, rhaB, rhaD, rhaM, lptG, lptF, pepA, rraB, argF, pyrB, nrdD, nrdG, cas1e, cas6e, cas5e, cas7e, casB, casA, cas3, exbD, exbB, metC, dkgA, ftsP, parC, parE, yqiA, cpdA, tolC, ygiD, rnpB, rsmI, diaA, yraP, mtgA, elbB, arcB, gltB, sspB, sspA, rpsI, rplM, degQ, degS, murA, mlaB, mlaC, mlaD, mlaE, mlaF, kdsD, kdsC, lptC, lptA, lptB, rpoN, ptsN, rapZ, npr, pmbA, aaeB, aaeA, aaeR, tldD, mreD, mreC, csrD, msrP, msrQ, aroQ, accB, accC, panF, prmA, dusB, fis, rrf, purH, purD, hupA, hemE, nudC, thiC, thiE, thiS, thiH, rpoC, rpoB, rplL, rplJ, rplA, rplK, nusG, secE, tuf, coaA, birA, murB, hemG, trkH, pepQ, fadB, fadA, ubiD, rfaH, hemB, tatD, tatC, tatB, tatA, ubiB, ubiE, rmuC, argH, argB, argC, argE, metE, metR, cysE, gpsA, secB, envC, rfaD, rfaF, rfaC, rfaQ, coaD, mutM, rpmG, rpmB, coaBC, slmA, pyrE, aguA, aguB, pfkA, fieF, cpxR, cpxA, ugpQ, ugpE, ugpA, ugpB, ttdA, ttdB, livF, livH, panM, rpoH, ftsX, ftsE, ftsY, rsmD, tusA, yhjD, bcsB, bcsA, yhjQ, bcsO, dppD, dppC, dppB, dcuR, dcuS, ibpB, ibpA, uxuA, uspA, uspB, pitA, ligB, rpoZ, spoT, trmH, recG, dtd, yihX, typA, yshB, hemN, yihI, polA, mobA, mobB, rbsR, rbsK, rbsB, rbsC, rbsA, rbsD, ravA, viaA, asnC, mioC, mnmG, rsmG, atpI, atpB, atpE, atpF, atpH, atpA, atpG, atpD, atpC, glmU, glmS, pstC, pstA, pstB, phoU, yieH, arnB, arnC, arnA, arnT, arnE, hppD, mnmE, yidC, rnpA, rpmH, dnaA, dnaN, recF, gyrB, rsmJ, prlC, rnz, gorA, frc, ghrB, glyQ, glyS, uca, sodA, fdhD, xylB, xylA, xylF, argG, phoA, tpiA, glpX, glpK, zapB, rraA, hslU, hslV, ftsN, cytR, priA, rpmE, metJ, metB, metF, oxyR, fabR, trmA, btuB, murI, hdfR, ilvL, ilvM, ilvE, ilvD, ilvA, ilvY, ilvC, putP, putA, rep, ppx, rhlB, trxA, rho, wecA, wzzE, wecC, rffC, rffA, wzxE, wzyE, rffM, tnpA, hemY, hemX, hemD, hemC, cyaY, dapF, xerC, yigB, uvrD, corA, rarD, pldA, recQ, rhtC, rhtB, pldB, yigL, glpQ, glpT, glpA, glpB, glpC, gntR, gntT, asd, nikR, glgB, glgX, glgC, glgA, glpE, glpG, malP, malQ, nfuA, gntX, bioH, greB, ompR, envZ, pckA, hslR, nudE, mrcA, hofQ, aroK, aroB, trpS, ppiA, ulaR, ulaG, crp, kefG, kefB, eat, fkpA, pmrB, pmrA, eptA, tusD, tusC, tusB, rpsL, rpsG, fusA, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplN, rplX, rplE, rpsN, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY, rpmJ, rpsM, rpsK, rpsD, rpoA, rplQ, mscL, trkA, rsmB, dprA, tsaC, aroE, metA, aceB, aceA, aceK, iclR, metH, lysC, epmB, efp, blc, frdD, frdC, frdA, epmA, mscM, psd, rsgA, abgT, queG, tsaE, amiB, mutL, miaA, hfq, hflX, hflK, hflC, mpl, ruvX, gshB, rsmE, endA, metK, speA, tsgA, tkt, fbaA, mscS, rpiA, serA, ettA, sltY, trpR, yjjX, gpmB, robA, creA, arcA, thrA, thrB, thrC, yaaA, satP, dnaK, dnaJ, nhaA, nhaR, rpsT, ribF, ileS, fkpB, ispH, rihC, dapB, carA, carB, folA, apaH, apaG, rsmA, pdxA, surA, lptD, djlA, rluA, rapA, ilvN, ilvB, ivbL, thiQ, thiP, tnaA, tnaC, leuB, leuA, leuL, ilvI, cra, mraZ, rsmH, ftsL, murE, murF, mraY, murD, ftsW, murG, murC, ftsQ, ftsA, ftsZ, lpxC, secM, secA, mutT, yacG, zapD, coaE, hofC, gspE, ppdD, nadC, ampD, ampE, pdhR, aceE, aceF, lpdA, acnB, vgrG, uvrA, cas1f, cas3f, csy1, csy2, csy3, cas6f, alr, dnaB, pspG, dusA, lysA, galR, lpxO, lplT, hemW, codA, nsrR, rlmB, bsmA, rpsF, priB, rpsR, rplI, ytfE, cysQ, msrA, plsY, folB, glnE, hldE, ligA, garD, gudD, garL, barA, rlmD, relA, mazG, pyrG, queE, queD, cysJ, cysI, cysD, cysN, cysC, ftsB, ispD, ispF, truD, nlpD, rpoS, proS, tsaA, rcsF, metI, metN, gmhB, pssA, trxC, emrB, emrA, mprA, ygaH, proX, proW, proV, atzF, hpxA, puuE, hpxZ, hpxX, hpxK, mtnC, mtnA, dinB, pepD, frsA, proB, proA, yehT, eutR, yjfF, mgtS, cybB, pncC, recA, recX, alaS, csrA, yqaB, luxS, rpsP, rimM, trmD, rplS, tyrA, pheA, raiA, bamD, rluD, pgeF, clpB, mltD, gloB, rnhA, dnaQ, speD, speE, panD, panC, panB, folK, pcnB, gluQRS, dksA, sfsA, thpR, hrpB, mrcB, hemL, clcA, erpA, btuF, mtnN, degP, cysT, cysW, gltX, grcA, srmB, nadB, rpoE, rseA, rseB, rseC, lepA, lepB, recO, pdxJ, pdeH, murQ, tadA, mltF, purL, qseG, glrR, glnB, hmpA, suhB, trmJ, iscR, iscU, iscA, hscB, hscA, fdx, iscX, pepB, sseB, sseA, trmG/rlmN, pilW, rodZ, ispG, hisS, bamB, der, xseA, guaB, guaA, thiM, thiD, psiE, baeR, baeS, mdtC, ompA, sulA, yccS, helD, hspQ, tusE, yccA, ppk1, purK, purE, ppiB, cysS, ybcJ, folD, hutG, hutC, hutH, cynS, cynR, gspC, gspD, gspF, gspG, gspH, gspI, gspJ, gspL, ypdK, dhbA, entE, fepG, fepD, entS, fepB, mlaA, fadL, fadI, fadJ, sixA, smrB, prmB, aroC, mepA, mnmC, fabB, tctD, pdxB, truA

Culture events
Isolated:
Actioned by:
Gamze BolukMohammad Arif (Reference number PL65)
Date:
23 August 2018 (Verbatim: 23 Aug 2018)
Deposited:
Note:
ORCID 0000-0002-5887-2050 University of Hawaii at Manoa
Actioned by:
Mohammad Arif
Date:
15 November 2021 (Verbatim: 15 Nov 2021)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice