Systematics Collections Data

ICMP 21080 – Xanthomonas campestris pv. campestris (Pammel 1895) Dowson

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 21080
Culture type:
Bacterial Culture
Database record added:
02 September 2015
Database record updated:
05 March 2021
Components
Primary component
Active identification
Determined name:
Xanthomonas campestris pv. campestris (Pammel 1895) Dowson 1939
Determiner:
E. van Zijill de Jong
Identification date:
Preferred name:
Xanthomonas campestris pv. campestris (Pammel 1895) Dowson
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Lysobacterales
Family:
Lysobacteraceae
Identification type:
Determination
Associations:
isolated from Brassica oleracea var. capitata L.
Other components
Active identification
Determined name:
Brassica oleracea var. capitata L.
Determiner:
Identification date:
Preferred name:
Brassica oleracea L.
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Brassicales
Family:
Cruciferae
Vernacular name:
Cabbage
Identification type:
Determination
Part affected:
Seed
Collection events
Primary collection event
Collection event type:
Unknown
Standard locality
Location:
Canterbury
Georeferences:
Latitude and Longitude (WGS84):  -43.3  172   (WGS84 -43.3 172.)
Verbatim locality:
Canterbury
Verbatim collector:
A. Scott
Standardised collector:
A. Scott
Verbatim date:
9 July 2010
Start date:
2010-07-09
Country:
New Zealand
New Zealand Area Codes:
Mid Canterbury
Culture flags
Price Category:
Category 1
Culture notes
Pathogenic to:
Cabbage
Growth Conditions:
Yeast dextrose chalk agar, 28C, dark for 2 days
Characterised as:
Morphology, plant pathogenicity test and 16S rRNA sequencing
External links
GenBank:

CP012145 - gyrB, gltB, lldD, glnA, dkgB, glpK, gidA, ubiA, trpD, trpC, purH, groEL, aceE, treA, cca, hppA, gltA, garD, gudD, rph, sucC, ruvB, relA, gcvT, fadE, prfC, hemE, aroK, sufC, pyrB, murD, gpmA, leuS, tldD, pmbA, dcd, rimO, glmM, nusA, truB, rplT, ihfA, tgt, secD, potG, mutL, rpmJ, rpsA, guaA, ugpC, uvrC, sirA, clpA, clpS, flgA, flgB, flgD, flgG, flgH, flgJ, flgK, fliF, fliA, motC, acnA, greA, carB, hisH, hisD, ispG, panB, hflB, eno, pyrG, rplI, rpsR, sbcB, ppnK, aspA, sucA, dnaK, smpB, emrB, asnB, frr, fliI, ssaR, rpsP, ispH, obgE, minC, dnaE2, prpB, fabG, rpmF, recR, cysW, rplQ, secY, rplX, rplW, rplD, rpsJ, tuf, fusA, rpoB, rplL, nusG, ychF, prfA, rbn, secA, murC, glyA, cpsB, glmU, alr, rpsU, pyrE, argS, uvrD, rpmB, actP, tatA, rnpA, rpmH

PRJNA283327 - Xanthomonas campestris pv. campestris strain:ICMP 21080 Genome sequencing

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Literature:

Desai, Dhairyasheel; Li, Jin-Hua; van Zijll de Jong, Eline; Braun, Robert; Pitman, Andrew; Visnovsky, Sandra; Hampton, John; Christey, Mary (2015)Draft Genome Sequences of Two New Zealand Xanthomonas campestris pv. campestris Isolates, ICMP 4013 and ICMP 21080.Genome Announcements3(5). DOI: 10.1128/genomeA.01247-15

Afrin, Khandker Shazia ; Rahim, Md Abdur ; Jung, Hee-Jeong ; Park, Jong-In ; Kim, Hoy-Taek ; Nou, Ill-Sup (2019)Development of Molecular Marker through Genome Realignment for Specific Detection of Xanthomonas campestris pv. campestris Race 5, a Pathogen of Black Rot Disease.Journal of Microbiology and Biotechnology29(5)785-793. DOI: 10.4014/jmb.1901.01050

Afrin, Khandker Shazia; Rahim, Md Abdur; Rubel, Mehede Hassan; Park, Jong-In; Jung, Hee-Jeong; Kim, Hoy-Taek; Nou, Ill-Sup (2020)Development of PCR-Based Molecular Marker for Detection of Xanthomonas campestris pv. campestris Race 6, the Causative Agent of Black Rot of Brassicas.The Plant Pathology Journal36(5)418-427. DOI: 10.5423/PPJ.OA.06.2020.0103

Culture events
Deposited:
Actioned by:
E. Z. van Zijll de Jong
Date:
28 August 2015 (Verbatim: 28 Aug 2015)
Isolated:
Actioned by:
A. Scott (Reference number Xcc32)
Date:
09 July 2010 (Verbatim: 9 July 2010)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice