Systematics Collections Data

ICMP 18800 – Pseudomonas syringae pv. actinidiae Takikawa et al. 1989

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 18800
Culture type:
Bacterial Culture
Loan status:
Active
Database record added:
09 March 2011
Database record updated:
11 August 2023
Components
Primary component
Active identification
Determined name:
Pseudomonas syringae pv. actinidiae Takikawa et al. 1989
Determiner:
R.K. Taylor
Identification date:
Preferred name:
Pseudomonas syringae pv. actinidiae Takikawa et al. 1989
Division:
Pseudomonadota
Class:
Gammaproteobacteria
Order:
Pseudomonadales
Family:
Pseudomonadaceae
Identification type:
Determination
Associations:
isolated from Actinidia deliciosa
Other identifications
Identification
Determined name:
Pseudomonas syringae pv. actinidiae
Determiner:
Identification date:
Preferred name:
Pseudomonas syringae pv. actinidiae Takikawa et al. 1989
Active:
no
Identification type:
Received as
Other components
Active identification
Determined name:
Actinidia deliciosa
Determiner:
Identification date:
Preferred name:
Actinidia deliciosa (A.Chev.) C.F.Liang & A.R.Ferguson
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Ericales
Family:
Actinidiaceae
Vernacular name:
Kiwfruit var. Hayward
Identification type:
Determination
Part affected:
Leaf
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
Paengaroa
Georeferences:
Latitude and Longitude (WGS84):  -37.822  176.413 
Verbatim locality:
Paengaroa
Verbatim collector:
Kiwifruit Vine Health
Standardised collector:
Kiwifruit Vine Health
Verbatim date:
Nov 2010
Start date:
2010-11
Country:
New Zealand
New Zealand Area Codes:
Bay of Plenty
Culture flags
MPI:
Restricted Culture
Price Category:
Category 1
MPI:
Unwanted Organism
Culture notes
Characterised as:
Psa3 (Chapman et al. 2012) = Psa-V. LOPAT 1a. Confirmed by PCR & Multilocus sequence typing (Rees-George)
External links
GenBank:

ANJD00000000 - genomic DNA

PRJNA74969 - Pseudomonas syringae pv. actinidiae ICMP 18800 Genome sequencing and assembly

HG521830 - tmRNA Psmon_syrin_DC3000

HG783691 - tmRNA Psmon_syrin_DC3000

KR091952 - capsid and scaffold protein, class II holin, collar/head-to-tail joining protein, DNA ligase, DNA packaging protein, DNA packaging protein A, DNA polymerase, DNA-directed RNA polymerase, endonuclease, endopeptidase Rz, HNS binding protein, host RNA polymerase inhibitor, hypothetical protein, internal virion protein A, internal virion protein B, internal virion protein C, internal virion protein D, N-acetylmuramoyl-L-alanine amidase, primase/helicase protein, putative exonuclease, ssDNA-binding protein, tail assembly protein, tail fiber protein

Note: virus

KJ409772 - DNA polymerase I, guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase, (p)ppGpp synthetase II, hypothetical protein, membrane protein, nicotinamide phosphoribosyltransferase, putative peptidoglycan binding protein, ribonucleotide reductase of class Ia (aerobic), alpha subunit, ribose-phosphate pyrophosphokinase, RNA ligase, tail fiber protein, terminase, large subunit, tRNA-Arg, tRNA-Asn, tRNA-Cys, tRNA-Glu, tRNA-Gly, tRNA-Ile, tRNA-Leu, tRNA-Phe, tRNA-Pro, tRNA-Trp, tRNA-Val

Note: virus

NC_023601 - ATPase, ATP-dependent DNA ligase, ATP-dependent protease, baseplate hub, baseplate spike, baseplate wedge subunit, dCMP deaminase, DNA methyltransferase, DNA polymerase I, DNA primase/helicase, DprA-like DNA recombination-mediator protein, endolysin, head fiber protein, head protein, HNH endonuclease, holin, hypothetical protein, lipase, major head protein, membrane protein, metal-dependent phosphohydrolase, minor tail protein, nicotinamide phosphoribosyl transferase, PhoH-like phosphate starvation-inducible, phosphoesterase, portal protein, pyrophosphatase, ribonucleotide reductase, ribose-phosphate pyrophosphokinase, RNA ligase, Rz-like spanin, structural protein, tail assembly chaperone, tail completion or Neck1 protein, tail fiber protein, tail length tape measure protein, tail sheath, tellurite resistance, terminase large subunit, thymidylate synthase, tRNA-Arg, tRNA-Asn, tRNA-Cys, tRNA-Glu, tRNA-Gly, tRNA-Ile, tRNA-Leu, tRNA-Phe, tRNA-Pro, tRNA-Trp, tRNA-Val, virion structural protein

Note: virus

NC_047747 - amidase, DNA ligase, DNA polymerase I, DNA primase/helicase, endonuclease, Gp5.5-like host HNS inhibition, head assembly, head-tail adaptor, HNS binding protein, holin, host range and adsorption protein, hypothetical protein, internal virion protein, internal virion protein with endolysin domain, major head protein, nucleotidyltransferase, putative exonuclease, RNA polymerase, RNA polymerase inhibitor, Rz-like spanin, ssDNA-binding protein, tail fiber protein, tail protein, terminase large subunit, terminase small subunit

Note: virus

Literature:

Wojtus, Joanna K.; Frampton, Rebekah A.; Warring, Suzanne; Hendrickson, Heather; Fineran, Peter C. (2019)Genome Sequence of a Jumbo Bacteriophage That Infects the Kiwifruit Phytopathogen Pseudomonas syringae pv. actinidiae.Microbiology Resource Announcements8(22). DOI: 10.1128/MRA.00224-19

Note: bacteriophage host

Culture events
Isolated:
Actioned by:
Robert K. Taylor
Date:
30 November 2010 (Verbatim: 30 Nov 2010)
Deposited:
Actioned by:
Robert K. Taylor (Reference number T10-05852)
Date:
07 March 2011 (Verbatim: 07 Mar 2011)
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice