Specimen Details

ICMP 12955 – Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 12955

Culture type:

Fungal Culture

Database record added:

25 January 2002

Database record updated:

31 March 2020

Components

Primary component

Active identification

Determined name:

Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous

Determiner:

Damm et al.

Identification date:

2012 (Verbatim: 2012)

Preferred name:

Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous

Division:

Ascomycota

Class:

Sordariomycetes

Order:

Glomerellales

Family:

Glomerellaceae

Identification type:

Determination

Associations:

isolated from Fragaria X ananassa Duch.

Other identifications

Identification

Determined name:

Glomerella miyabeana (Fukushi) Arx

Determiner:

Identification date:

Preferred name:

Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous

Active:

Identification type:

Determination

Identification

Determined name:

Glomerella miyabeana

Determiner:

Identification date:

Preferred name:

Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Fragaria X ananassa Duch.

Determiner:

Identification date:

Preferred name:

Fragaria ×ananassa Duchesne

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Rosales

Family:

Rosaceae

Vernacular name:

Strawberry

Identification type:

Determination

Part affected:

Fruit rot

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Auckland

Georeferences:

Latitude and Longitude (WGS84): -36.840556 174.74

Verbatim locality:

Auckland

Verbatim collector:

P.R. Johnston

Standardised collector:

Peter R. Johnston

Verbatim date:

Nov 1989

Start date:

1989-11

Country:

New Zealand

New Zealand Area Codes:

Auckland

Culture flags

Price Category:

Category 1

Culture notes

Characterised as:

Identity confirmed by sequencing
P.R. Johnston, 1997

External links

GenBank:

JQ949135 - CHS-1

JQ948474 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

U79711 - 28S ribosomal RNA

MH865021 - genomic DNA

MH876458 - large subunit ribosomal RNA

Literature:

Vu, D.; Groenewald, M.; de Vries, M.; Gehrmann, T.; Stielow, B.; Eberhardt, U.; Al-Hatmi, A.; Groenewald, J.Z.; Cardinali, G.; Houbraken, J.; Boekhout, T.; Crous, P.W.; Robert, V.; Verkley, G.J.M. (2019)Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.Studies in Mycology92(1)135-154. DOI: 10.1016/j.simyco.2018.05.001

Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Crous, P.W. (2012)The Colletotrichum acutatum species complex.Studies in Mycology7337-113. DOI: 10.3114/sim0010

Culture events

Isolated:

Date:

01 November 1989 (Verbatim: 01 Nov 1989)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

Peter R. Johnston (Reference number 1115-1)

Date:

01 August 1996 (Verbatim: 01 Aug 1996)

Duplicates

Westerdijk Fungal Biodiversity Institute: CBS 128557

Direction:

Duplicate

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice