Specimen Details

ICMP 12926 – Colletotrichum johnstonii Damm, P.F. Cannon & Crous

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 12926

Type status:

ex Holotype

Culture type:

Fungal Culture

Database record added:

25 January 2002

Database record updated:

31 October 2024

Components

Primary component

Active identification

Determined name:

Colletotrichum johnstonii Damm, P.F. Cannon & Crous

Determiner:

U. Damm

Identification date:

2012-10 (Verbatim: Oct 2012)

Preferred name:

Colletotrichum johnstonii Damm, P.F. Cannon & Crous

Division:

Ascomycota

Class:

Sordariomycetes

Order:

Glomerellales

Family:

Glomerellaceae

Identification type:

Determination

Note:

from Damm et al., Studies in Mycology 73: 37-113

Associations:

isolated from Solanum lycopersicum L.

Other identifications

Identification

Determined name:

Colletotrichum "acutatum Group C" P.R. Johnst.

Determiner:

P.R. Johnston

Identification date:

1997 (Verbatim: 1997)

Preferred name:

Colletotrichum "acutatum Group C" P.R. Johnst.

Active:

Identification type:

Determination

Identification

Determined name:

Colletotrichum acutatum J.H. Simmonds

Determiner:

Identification date:

Preferred name:

Colletotrichum acutatum J.H. Simmonds

Active:

Identification type:

Determination

Identification

Determined name:

Colletotrichum acutatum

Determiner:

Identification date:

Preferred name:

Colletotrichum acutatum J.H. Simmonds

Active:

Identification type:

Received as

Other components

Active identification

Determined name:

Solanum lycopersicum L.

Determiner:

Identification date:

Preferred name:

Solanum lycopersicum L.

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Solanales

Family:

Solanaceae

Vernacular name:

tomato

Identification type:

Determination

Note:

changed from "pear" on 9 Jan 2012, correction made after consulting original collection notes

Part affected:

Ripe fruit rot

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Remuera

Georeferences:

Latitude and Longitude (WGS84): -36.876 174.799

Verbatim locality:

Remuera

Verbatim collector:

J.M. Dingley

Standardised collector:

Joan M. Dingley

Verbatim date:

28 Feb 1990

Start date:

1990-02-28

Country:

New Zealand

New Zealand Area Codes:

Auckland

Culture flags

Price Category:

Category 1

Culture notes

Other Details:

C. acutatum group C (Johnston & Jones)

External links

GenBank:

JQ949105 - CHS-1

JQ948775 - GAPDH

JQ949765 - ACT

JQ948444 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

JQ950095 - TUB2

JQ949435 - HIS3

NR_111748 - 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

MH876448 - large subunit ribosomal RNA

MH865012 - genomic DNA

U79696 - 28S ribosomal RNA

CAU79696

Literature:

Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Crous, P.W. (2012)The Colletotrichum acutatum species complex.Studies in Mycology7337-113. DOI: 10.3114/sim0010

Vu, D.; Groenewald, M.; de Vries, M.; Gehrmann, T.; Stielow, B.; Eberhardt, U.; Al-Hatmi, A.; Groenewald, J.Z.; Cardinali, G.; Houbraken, J.; Boekhout, T.; Crous, P.W.; Robert, V.; Verkley, G.J.M. (2019)Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.Studies in Mycology92(1)135-154. DOI: 10.1016/j.simyco.2018.05.001

Johnston, Peter R.; Jones, Derek (1997)Relationships amongColletotrichumisolates from fruit-rots assessed using rDNA sequences.Mycologia89(3)420-430. DOI: 10.1080/00275514.1997.12026801

Culture events

Isolated:

Actioned by:

Peter R. Johnston

Date:

01 March 1990 (Verbatim: 1 Mar 1990)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

Peter R. Johnston (Reference number C1139-3)

Date:

01 August 1996 (Verbatim: 01 Aug 1996)

Duplicates

Westerdijk Fungal Biodiversity Institute: CBS 128532

Direction:

Duplicate

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice