Specimen Details

ICMP 12064 – Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B.S. Weir

Data provider:

International Collection Of Microorganisms

Barcode:

ICMP 12064

Culture type:

Fungal Culture

Database record added:

25 January 2002

Database record updated:

19 January 2021

Components

Primary component

Active identification

Determined name:

Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir

Determiner:

B. Weir

Identification date:

2012 (Verbatim: 2012)

Preferred name:

Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B.S. Weir

Division:

Ascomycota

Class:

Sordariomycetes

Order:

Glomerellales

Family:

Glomerellaceae

Identification type:

Determination

Associations:

isolated from Citrus sp.

Other identifications

Identification

Determined name:

Glomerella cingulata (Stoneman) Spauld. & H. Schrenk

Determiner:

Identification date:

Preferred name:

Colletotrichum gloeosporioides (Penz.) Penz. & Sacc.

Active:

Identification type:

Determination

Identification

Determined name:

Glomerella cingulata

Determiner:

Identification date:

Preferred name:

Colletotrichum gloeosporioides (Penz.) Penz. & Sacc.

Active:

Identification type:

Received as

Identification

Determined name:

Colletotrichum "gloeosporioides Group E" P.R. Johnst.

Determiner:

P.R. Johnston

Identification date:

1997 (Verbatim: 1997)

Preferred name:

Colletotrichum novae-zelandiae Damm, P.F. Cannon, Crous, P.R. Johnst. & B.S. Weir

Active:

Identification type:

Determination

Other components

Active identification

Determined name:

Citrus sp.

Determiner:

Identification date:

Preferred name:

Citrus

Division:

Tracheophyta

Class:

Magnoliopsida

Order:

Sapindales

Family:

Rutaceae

Vernacular name:

Grapefruit

Identification type:

Determination

Part affected:

Skin of ripe fruit

Present:

Collection events

Primary collection event

Collection event type:

Field

Standard locality

Location:

Auckland

Georeferences:

Latitude and Longitude (WGS84): -36.840556 174.74

Verbatim locality:

Auckland

Verbatim collector:

P.R. Johnston

Standardised collector:

Peter R. Johnston

Verbatim date:

2/8/1988

Start date:

1988-08-02

Country:

New Zealand

New Zealand Area Codes:

Auckland

Culture flags

Price Category:

Category 1

Culture notes

Characterised as:

Identified by sequencing and morphology
B. Weir

External links

GenBank:

JQ005229 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

U79671 - 28S ribosomal RNA

MH865627 - genomic DNA

MH877051 - large subunit ribosomal RNA

Literature:

Vu, D.; Groenewald, M.; de Vries, M.; Gehrmann, T.; Stielow, B.; Eberhardt, U.; Al-Hatmi, A.; Groenewald, J.Z.; Cardinali, G.; Houbraken, J.; Boekhout, T.; Crous, P.W.; Robert, V.; Verkley, G.J.M. (2019)Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.Studies in Mycology92(1)135-154. DOI: 10.1016/j.simyco.2018.05.001

Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Johnston, P.R.; Weir, B.S.; Tan, Y.P.; Shivas, R.G.; Crous, P.W. (2012)The Colletotrichum boninense species complex.Studies in Mycology731-36. DOI: 10.3114/sim0002

Culture events

Isolated:

Date:

02 August 1988 (Verbatim: 02 Aug 1988)

Deposited:

Note:

Derived from earliest batch date

Actioned by:

Ross E. Beever (Reference number 589)

Date:

01 September 1994 (Verbatim: 01 Sep 1994)

Transferred from:

Actioned by:

Peter R. Johnston (Reference number C1012.12)

Duplicates

Westerdijk Fungal Biodiversity Institute: CBS 128502

Direction:

Duplicate

Westerdijk Fungal Biodiversity Institute: CBS 130240

Permissions

Project permits

Project title:

Local Contexts - ICMP Culture Collection

Reference:

ICMP Collection - Local Contexts

Biocultural (BC) Notice